RNA id: TU162490


Basic Information

Item Value
RNA id TU162490
length 664
RNA type TUCP
GC content 0.45
exon number 1
gene id G141363
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39763933 ~ 39765473 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAATAATGTTAGCAATAAACTTCGCCCCTCACTATAACTCCATAGATGTCAAGGTTATCCTGAGTAAATCGTTACAAAATGGAGATAAagctatgtaaaaaaaataatgacattttccatgaaagagacagagaaagactcTTAAGGGCTTTAAGCTGGACATTTGTTCATCACACAGGGAGAgtctcaattgcatttccttgatttcttgcatcctctctcctccttctcaaaacccaatGGATgaaaaggtcagaggtcactCCCCTATAACTTCTTATCCAACTGCTTTTGAGAAGGTGAGGAAAGAGGACTCGAGGAATCAAGGAAACTTGCCACAGTCACTGACTAGTCCACCTCCACCTTCTCTAGAACCACGTTGTGTGGAGCTCCATCCAGGTAGTAGACCATCCTCTCCCCAGCCTGGCCCTCTGAAACGCCTTCACTCTGCTGGTCGTCCTCCCCTCCCTGGTGCTGGGTGTACATGGTCCCCTCCACCTGGAGGGTGTTATCATCCAGCTCTGTCACGATGTAGTGGGTCCCCTCATCGTTGACGATCACCTGGGTCAGCCCCTCCTTCATCATCAGCTGGCTGGCTGCAAACTGCAGCACCTCCTGGACCACCTGCTCCTCCTGCACCTGCTGCTCCTcgcacacctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162479 lncRNA downstream 1976 39762270 ~ 39762531 (-) True G141360
TU162477 lncRNA downstream 3245 39761038 ~ 39761262 (-) True G141358
TU162471 lncRNA downstream 21889 39742388 ~ 39742618 (-) True G141352
TU162457 lncRNA downstream 45252 39718997 ~ 39719255 (-) True G141338
TU162240 lncRNA downstream 203156 39560924 ~ 39561351 (-) True G141147
TU162481 lncRNA upstream 386 39765556 ~ 39766347 (-) False G141362
TU162485 lncRNA upstream 430 39765600 ~ 39766347 (-) False G141362
TU162483 lncRNA upstream 600 39765770 ~ 39766347 (-) False G141362
TU162482 lncRNA upstream 788 39765958 ~ 39766347 (-) False G141362
TU162484 lncRNA upstream 851 39766021 ~ 39766347 (-) False G141362
XM_021562336.2 mRNA downstream 209074 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 263019 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 266946 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 298901 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 298929 39449495 ~ 39465578 (-) False si:ch211-154o6.3
LOC110489623 mRNA upstream 48953 39814123 ~ 39821845 (-) True LOC110489623
XM_036948238.1 mRNA upstream 238600 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 459903 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 459903 40225073 ~ 40298251 (-) False LOC110489653
XM_036948273.1 mRNA upstream 459903 40225073 ~ 40298260 (-) False LOC110489653
TU161916 other downstream 700089 39063862 ~ 39064418 (-) True G140879
TU161480 other downstream 936312 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 1715841 38046702 ~ 38048666 (-) False LOC110489105
TU160231 other downstream 1716160 38046702 ~ 38048347 (-) False LOC110489105
TU163223 other upstream 459452 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other upstream 459452 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other upstream 459452 40224622 ~ 40241404 (-) False LOC110489653
TU164135 other upstream 1098044 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1949376 41714546 ~ 41730422 (-) True LOC110489860

Expression Profile