RNA id: XM_036948182.1


Basic Information

Item Value
RNA id XM_036948182.1
length 981
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC118940039
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39499737 ~ 39501488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGGTAGTGCTGAATTTCCCCAAACTTCTTTGCAGCTTCTATTTATTACAGCTGGTGGTCTGTCTTGGTGAGGCAAAGTGTTCCGTTCACAAGCTGGAGACAGGCATCCAAGGGAAGTCAATGCCATGGTTCTGGAGATTGTGTGGAGACTATTGTCACCAGTGCAGTGGAGCCTGTGTCTTCTATCCCTTCTGCTTCCCATAGTATCAATGATATGTGCGATCCGTTCAAAAAGTAGAAAGACTTCCAGGTTGTCATTGGCTGAAATGGGACCGATCTCTGGTGAAAGGCCCCCAGATTCAACTGAGGCCAAGACCTCAGAACTAAGGAAGAATATCATTGGACCAGCATCCTCAAAAAGAAAGTCAACCCAGTCCCAAAGAGGGCACAGAGGGTCTTTCCCAGGGCAGAACACCCCAAGGCCGGTGAAGAAGGCTTTGAGGCAGTTGCCTCCCTTACCTGAGCTGGAGAAGAGCAGTGTCCGAAGACACAGCAGCTACACTGGGTCCGTAGTGTATGACGTTGTCGCCACAGAGGTTTGTAATCCATGGCCCACTACAGACAACCAGgcttctcaacaacagacagcaGACGGCAGCAACCACCTGGAGGAGGTAGATGAAAAGGGGGAAGTTCCGTTCCCTGTCTATGCCAAAGTCAACAAAACCAAAGTTTGCTCGAACTCATCAAGACGTTCACCACTGTATGCCAAAGTGAACAAGACTAGCTCCCGGACTGTGAAATCTTAACTACTGTTCTGGGGTGACTGATAAGTCAACACTGTGACCGATATGTCCTCCAAATGCGAAATAGTCTACTATGCTTTATGCTTAACTCGTTTTGTTCTTTCTTAAATGTTTATATGCGTATGTGTTTCTTATGTTGTTTCTCAGGCCCGCAATGCTACAAAGGCACAGAAATGACTTCTGTTGTAATTTACTTGGGTCTCAAGACAATAAATGAAGTTTGTTTGCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162144 lncRNA downstream 28977 39470402 ~ 39470760 (-) True G141091
TU162143 lncRNA downstream 29861 39469660 ~ 39469876 (-) True G141090
TU162135 lncRNA downstream 71958 39427547 ~ 39427779 (-) True G141082
TU162133 lncRNA downstream 73303 39422834 ~ 39426434 (-) True G141081
TU162131 lncRNA downstream 78599 39420812 ~ 39421138 (-) True G141079
TU162174 lncRNA upstream 15034 39516522 ~ 39550549 (-) True G141108
TU162231 lncRNA upstream 54470 39555958 ~ 39556282 (-) True G141138
TU162240 lncRNA upstream 59436 39560924 ~ 39561351 (-) True G141147
TU162457 lncRNA upstream 217509 39718997 ~ 39719255 (-) True G141338
TU162471 lncRNA upstream 240900 39742388 ~ 39742618 (-) True G141352
LOC110501545 mRNA downstream 2176 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 34131 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 34159 39449495 ~ 39465578 (-) False si:ch211-154o6.3
XM_036948058.1 mRNA downstream 34708 39449495 ~ 39465029 (-) False si:ch211-154o6.3
XM_036948101.1 mRNA downstream 50403 39442306 ~ 39449334 (-) False LOC110489516
XM_021562336.2 mRNA upstream 52315 39553803 ~ 39555433 (-) True nr0b2a
LOC110489623 mRNA upstream 312635 39814123 ~ 39821845 (-) True LOC110489623
XM_036948238.1 mRNA upstream 502282 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 723585 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 723585 40225073 ~ 40298251 (-) False LOC110489653
TU161916 other downstream 435319 39063862 ~ 39064418 (-) True G140879
TU161480 other downstream 671542 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 1451071 38046702 ~ 38048666 (-) False LOC110489105
TU160231 other downstream 1451390 38046702 ~ 38048347 (-) False LOC110489105
TU162487 other upstream 262445 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 262445 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 263019 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 263019 39764507 ~ 39765473 (-) True G141363
TU163223 other upstream 723134 40224622 ~ 40241404 (-) False LOC110489653

Expression Profile