LOC110489516 (LOC106605085)


Basic Information

Item Value
gene id LOC110489516
gene name LOC106605085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39442306 ~ 39449334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948101.1
TGGCTTGTATCAGTGTTTTCTGAACATAACAGAATACTTTTTTCCTCTGCCCCCAAAATGAGAACATTAACGCCATCTTCTGTATCTTCATTATTTCCGTCCTCAagtacatttcattttttttgctgTCCTTTTAATTGAGCGAGTTAAAAGCATAATTAGCATTTCAATCTTTCCTACAGTCTCCCTCCgtcctcctcctcgctctctctctctctctctgactctacatGTCTCTGTCGCTAAGGCAACCAATGCCTTTTCCTACTCGCTCTCTATATCTCCCCCTTTCTCATcgtctccctcattccctctctcttcagCCAGAGagagagagatgatcggAGGAGTTGGGGCTCAGTGAACAGAACGAAGCGATGGAGAGATGctccatCTCTCCTGTCAAACGACTGACCGCCCACCGCTGCCTTTTATTTCTCCTGGTTGCCGCGGTGACGCGACCCTCAACCTGTAACCGTGACGACGAGGGCGAGGGGCAGGTGGAGGCCTTCTCAGCCCAGCTGTCCATCACAGGACAGGTCACACCCACCCCTATTTGGTCCGTGGACTGGGGCCCCACACTAGCCCTGGAGGACGAGACGCATCACTTTCTGTCCAGCCAGGAAGCGGACCTGTACCACCATGGCCACGAAGTCCCCACGACAACCGCTGAGGCCTGGCTGCATCATCAGAGTGCACCGGGCAGCGTTTTGCCCCAGGAGCCCCTGGATCTGCTGGAGGCCCCGGACGCAGAAGGAgtggaggatggaggaagtgaggcagaggagagagagcctGAGGAAGTGGACCCTCAGTTTTACGTCACAGTGACCATCTCCTCTCTGCTCATCCTGACTGCTGTCATCATAACAGCCAAACTCTGttaCGACCGCAGCTGTTCCCAGCACCCGCCCCCGCTTTCCCGTGGCGtggccccccctctctctctcgccctccctcgtTCCCTGGCTCTGGAGGACAGCCGGCAGACGCTGCACGGCACCCCCTCCTTTACCGACAGGGAGAGGATCCCCGTGGTGAACCTCTGAGGCTTTTCTACGGGATGCGACGGAGAACGTCAACACCGCCGGAGGGTGTGCCCGTCGTGGCCCACCGCGTTCTTCTATTTATCTTTGACTGTGAAAATGAACTTCAGGAAACCAGGTATCCAGCCATGGCAAAACCTCtttttccctccatcccttcttcctGACGGAGAAAAGCCCGATCTCATCCCTTCCTTCCTGCTGCCATCCTCCCACGCCTCTGTTCTCCACTTTCCTATGGCTCTCTGTCACTGTCGACCGACCGAGCCTTCCGCTCTGTTTTATATTCCGTTGTCTGTACTGCCCCGGGCTGTAGCAGCAACACACATACAGCTCCCTCTGCTTTATCCGCTTTGACTAATTCACAAGCAAACAGTGTTAGATATCAATAGAACGTTTCAGTCCCGCCGGTGCCAAAACCGCATAGCTATATGGGGAATATTTTGGAATATTCATACAGCTATCTTGTGTAGCTGAACCTTGAACTATGATGAAATAGTGGACTTGGTTGTTGAAACTTAGTTGAACGTGAAATATGTGTGTTATCTGAAACTGAAATATAGGTTTTCAGCTAGCTGGTGAAGGGTTAAAACAATCCCTGTTGCCTAGGACTGAAGGGGGTATTTCACAAAGCTGGTTGGCAATGTTTTCGCCAGCAGCCAATGTGCTTAACACGACACGGTCCAAAAATCGCTGTTTACTCCCGCTTGGAAGCTTGGAATGCAAATAGGCCCACTGCAGCTTCCACATTCGCAATGTGTTTTCTGGGTGTTTTTTATTCCCTAAATTATTCTCTTCATTTGTTCCTTTAATTTTCTCGCTTCTTTGCCGGTTCTCTTTGTTGTGCCTTTGTGAGCGTGTTATTTTGTCTCTGGAGCATGGGGATGAGCAGTGTTTTATATAGTACTGCTCTATATAGGGTTGTGAAATTCTGTACTTTTCCCAAAACTCCCAGGTTTTCCAGCCAAGATTCCTGGAATTAGGAGGGAAGGAAATACAGGAATTTCCCAACCGGGATTACTGGAAAACCAGGGAACTTGCGGAAAGTTATCCTTGTTGTATATGAAAAGTGGTTTAAACAATGTGCAATACATGTTTGCATATATTGCAATCAGTACAATCAAACGATACATGTGGTACAATCAATGGTGGTTGCAGGTTAACATAATGGGTATAAATGATTCAGTCCAGAATTAATGAGTCATATTACCATCATCTGTTGTTTCTATCAAAATTCGTCACTGACTTCAAAGCTTACACTAGTGTTTACTGTAGGATGTTAGGGTAATTTACCTGTCCAACTCTTCCACCAGCTTTGAGAAATGACCCTCTGGACTTCCACTACACTAGTACACATAGTGTTGTGACATCATACGTGACTCGTGTCGTTCTGCAGTCTAGTGTTCCTTGGTTCTCAGTAGCATACCTGTAGACGTGTGGTTCCACTGTATGATGGAAAAACAATAAAAACTCAACACTGGTGTTTTA
>XM_036948110.1
TGGCTTGTATCAGTGTTTTCTGAACATAACAGAATACTTTTTTCCTCTGCCCCCAAAATGAGAACATTAACGCCATCTTCTGTATCTTCATTATTTCCGTCCTCAagtacatttcattttttttgctgTCCTTTTAATTGAGCGAGTTAAAAGCATAATTAGCATTTCAATCTTTCCTACAGTCTCCCTCCgtcctcctcctcgctctctctctctctctctgactctacatGTCTCTGTCGCTAAGGCAACCAATGCCTTTTCCTACTCGCTCTCTATATCTCCCCCTTTCTCATcgtctccctcattccctctctcttcagCCAGAGGTAGGCATGTTAACTGATATCTGTCTGAGTGAAtgttgtgtgcgtgcttgtgtgacAGTGAGTTGTCTGCtggtgggtgtgtgagagagagagagtgtgtgttcctgtctggtTGACTGAGTGACAGCGGTAGTAGATATGAAGTCAATCTTTCTGGAGCTAAAAGTACCACCTTATGGGATATTGGCCCCATGAATGCGTATGATGAATGTTTTGTGCACAGCCGTGTGCTTGCATGTCTGATGTGCGAACTGTATAAGCATGTGGCAAAATTAAGCGCTCATTTTGGACAGCCAGGAGTGCCACtgcccaggagagagagagagagagagaaagagagagagaggggtgtgtgtgtattcctgtACTGCCGTCTATGAGTGTCTGTTTACATTTTCAATATCAGTGTCAGAAGAGAAGtgaaccctccctctctctctctctcttttctttttcttctttcctcccagagagagagatgatcggAGGAGTTGGGGCTCAGTGAACAGAACGAAGCGATGGAGAGATGctccatCTCTCCTGTCAAACGACTGACCGCCCACCGCTGCCTTTTATTTCTCCTGGTTGCCGCGGTGACGCGACCCTCAACCTGTAACCGTGACGACGAGGGCGAGGGGCAGGTGGAGGCCTTCTCAGCCCAGCTGTCCATCACAGGACAGGTCACACCCACCCCTATTTGGTCCGTGGACTGGGGCCCCACACTAGCCCTGGAGGACGAGACGCATCACTTTCTGTCCAGCCAGGAAGCGGACCTGTACCACCATGGCCACGAAGTCCCCACGACAACCGCTGAGGCCTGGCTGCATCATCAGAGTGCACCGGGCAGCGTTTTGCCCCAGGAGCCCCTGGATCTGCTGGAGGCCCCGGACGCAGAAGGAgtggaggatggaggaagtgaggcagaggagagagagcctGAGGAAGTGGACCCTCAGTTTTACGTCACAGTGACCATCTCCTCTCTGCTCATCCTGACTGCTGTCATCATAACAGCCAAACTCTGGATCCCCGTGGTGAACCTCTGAGGCTTTTCTACGGGATGCGACGGAGAACGTCAACACCGCCGGAGGGTGTGCCCGTCGTGGCCCACCGCGTTCTTCTATTTATCTTTGACTGTGAAAATGAACTTCAGGAAACCAGGTATCCAGCCATGGCAAAACCTCtttttccctccatcccttcttcctGACGGAGAAAAGCCCGATCTCATCCCTTCCTTCCTGCTGCCATCCTCCCACGCCTCTGTTCTCCACTTTCCTATGGCTCTCTGTCACTGTCGACCGACCGAGCCTTCCGCTCTGTTTTATATTCCGTTGTCTGTACTGCCCCGGGCTGTAGCAGCAACACACATACAGCTCCCTCTGCTTTATCCGCTTTGACTAATTCACAAGCAAACAGTGTTAGATATCAATAGAACGTTTCAGTCCCGCCGGTGCCAAAACCGCATAGCTATATGGGGAATATTTTGGAATATTCATACAGCTATCTTGTGTAGCTGAACCTTGAACTATGATGAAATAGTGGACTTGGTTGTTGAAACTTAGTTGAACGTGAAATATGTGTGTTATCTGAAACTGAAATATAGGTTTTCAGCTAGCTGGTGAAGGGTTAAAACAATCCCTGTTGCCTAGGACTGAAGGGGGTATTTCACAAAGCTGGTTGGCAATGTTTTCGCCAGCAGCCAATGTGCTTAACACGACACGGTCCAAAAATCGCTGTTTACTCCCGCTTGGAAGCTTGGAATGCAAATAGGCCCACTGCAGCTTCCACATTCGCAATGTGTTTTCTGGGTGTTTTTTATTCCCTAAATTATTCTCTTCATTTGTTCCTTTAATTTTCTCGCTTCTTTGCCGGTTCTCTTTGTTGTGCCTTTGTGAGCGTGTTATTTTGTCTCTGGAGCATGGGGATGAGCAGTGTTTTATATAGTACTGCTCTATATAGGGTTGTGAAATTCTGTACTTTTCCCAAAACTCCCAGGTTTTCCAGCCAAGATTCCTGGAATTAGGAGGGAAGGAAATACAGGAATTTCCCAACCGGGATTACTGGAAAACCAGGGAACTTGCGGAAAGTTATCCTTGTTGTATATGAAAAGTGGTTTAAACAATGTGCAATACATGTTTGCATATATTGCAATCAGTACAATCAAACGATACATGTGGTACAATCAATGGTGGTTGCAGGTTAACATAATGGGTATAAATGATTCAGTCCAGAATTAATGAGTCATATTACCATCATCTGTTGTTTCTATCAAAATTCGTCACTGACTTCAAAGCTTACACTAGTGTTTACTGTAGGATGTTAGGGTAATTTACCTGTCCAACTCTTCCACCAGCTTTGAGAAATGACCCTCTGGACTTCCACTACACTAGTACACATAGTGTTGTGACATCATACGTGACTCGTGTCGTTCTGCAGTCTAGTGTTCCTTGGTTCTCAGTAGCATACCTGTAGACGTGTGGTTCCACTGTATGATGGAAAAACAATAAAAACTCAACACTGGTGTTTTA

Function

NR:

description
uncharacterized protein LOC110489516

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948101.1 False 2534 mRNA 0.49 6 39442306 39449334
XM_036948110.1 True 2860 mRNA 0.47 4 39442306 39449334

Neighbor

gene id symbol gene type direction distance location
LOC100301666 LOC100301666 coding downstream 29736 39410248 ~ 39412570 (-)
LOC110489468 LOC106605089 coding downstream 76434 39350932 ~ 39365872 (-)
LOC110489429 LOC106605091 coding downstream 94795 39338189 ~ 39347511 (-)
LOC110489325 tpi1b coding downstream 208537 39228812 ~ 39233769 (-)
LOC118939935 LOC106605099 coding downstream 221666 39218551 ~ 39220640 (-)
si:ch211-154o6.3 LOC106605084 coding upstream 161 39449495 ~ 39465606 (-)
LOC110501545 NA coding upstream 38221 39487555 ~ 39497561 (-)
LOC118940039 NA coding upstream 50403 39499737 ~ 39501488 (-)
nr0b2a LOC106605079 coding upstream 104469 39553803 ~ 39555433 (-)
LOC110489623 zadh2 coding upstream 364789 39814123 ~ 39821845 (-)
G141082 NA non-coding downstream 14527 39427547 ~ 39427779 (-)
G141081 NA non-coding downstream 15872 39422834 ~ 39426434 (-)
G141079 NA non-coding downstream 21168 39420812 ~ 39421138 (-)
G141077 LOC100136501 non-coding downstream 36856 39404057 ~ 39405450 (-)
G141073 NA non-coding downstream 42449 39399623 ~ 39399857 (-)
G141090 NA non-coding upstream 20326 39469660 ~ 39469876 (-)
G141091 NA non-coding upstream 21068 39470402 ~ 39470760 (-)
G141108 NA non-coding upstream 67188 39516522 ~ 39550549 (-)
G141138 NA non-coding upstream 106624 39555958 ~ 39556282 (-)
G141147 NA non-coding upstream 111590 39560924 ~ 39561351 (-)
G140879 NA other downstream 377888 39063862 ~ 39064418 (-)
G140479 NA other downstream 614111 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1393640 38046700 ~ 38048666 (-)
G139231 NA other downstream 1689348 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1978548 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 314599 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 775288 40224622 ~ 40298333 (-)
G142918 NA other upstream 1413880 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2265212 41714269 ~ 41730507 (-)
G145010 NA other upstream 3257484 42706818 ~ 42707279 (-)

Expression


Co-expression Network