G141077 (LOC100136501)


Basic Information

Item Value
gene id G141077
gene name LOC100136501
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39404057 ~ 39405450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU162128
AGTAACAGGGGTGTTGGCATAGGCTTCCCTGCCCTGGTATGTCACCACACAGGTCCACTCTCCATTGTCTTGGCCTGTGACATTCATTACGGTCAGGCCCCCGTTATTTCCAATCTGGGCACGCTTGTCCTTGTTCAGGTCCTGTTTCTGGGGACTAAGCCATCTTCTCTGTGTCCCCTCAATTATTTCCTTTATGTCACACTTCAGATTAAGATTCTTCCCAGCCAACAGGGGAGAGACTGGCTGTACActcactgGGACAGTCTGAATGTGGTGATTAAGGTAATTTGTTTTGGGCTGAAATCTTTCAGTTCACATTTGAAGGATTTGAAGTCCTCCAGTCTGATTTTGTTGATGATCAGGGAGAAGTCAGTCTTGGACAGAGACAGCCTGTCTTTCCACTCTGGATCAAAGATTTTTGGTCCATCCCAAAGTACCATTGTACCGTCACCTTATCTGAACCCCACTTCAATCTGGGGAGTGTGACCGTCCCTCCCACCTGACCATACACCACATCTTCAGCCCCT

Function

NR:

description
T-cell surface glycoprotein CD4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162128 True 527 lncRNA 0.45 3 39404057 39405450

Neighbor

gene id symbol gene type direction distance location
LOC110489468 LOC106605089 coding downstream 38185 39350932 ~ 39365872 (-)
LOC110489429 LOC106605091 coding downstream 56546 39338189 ~ 39347511 (-)
LOC110489325 tpi1b coding downstream 170288 39228812 ~ 39233769 (-)
LOC118939935 LOC106605099 coding downstream 183417 39218551 ~ 39220640 (-)
LOC110489287 LOC106605101 coding downstream 194551 39197666 ~ 39209506 (-)
LOC100301666 LOC100301666 coding upstream 4798 39410248 ~ 39412570 (-)
LOC110489516 LOC106605085 coding upstream 36856 39442306 ~ 39449334 (-)
si:ch211-154o6.3 LOC106605084 coding upstream 44045 39449495 ~ 39465606 (-)
LOC110501545 NA coding upstream 82105 39487555 ~ 39497561 (-)
LOC118940039 NA coding upstream 94287 39499737 ~ 39501488 (-)
G141073 NA non-coding downstream 4200 39399623 ~ 39399857 (-)
G141061 NA non-coding downstream 15128 39388721 ~ 39388929 (-)
G141046 NA non-coding downstream 76668 39327110 ~ 39327389 (-)
G141003 LOC106605098 non-coding downstream 152946 39250265 ~ 39251111 (-)
G140997 LOC106605098 non-coding downstream 155886 39240917 ~ 39248171 (-)
G141079 NA non-coding upstream 15362 39420812 ~ 39421138 (-)
G141081 NA non-coding upstream 17384 39422834 ~ 39426434 (-)
G141082 NA non-coding upstream 22097 39427547 ~ 39427779 (-)
G141090 NA non-coding upstream 64210 39469660 ~ 39469876 (-)
G141091 NA non-coding upstream 64952 39470402 ~ 39470760 (-)
G140879 NA other downstream 339639 39063862 ~ 39064418 (-)
G140479 NA other downstream 575862 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1355391 38046700 ~ 38048666 (-)
G139231 NA other downstream 1651099 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1940299 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 358483 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 819172 40224622 ~ 40298333 (-)
G142918 NA other upstream 1457764 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2309096 41714269 ~ 41730507 (-)
G145010 NA other upstream 3301368 42706818 ~ 42707279 (-)

Expression


Co-expression Network