si:ch211-154o6.3 (LOC106605084)


Basic Information

Item Value
gene id si:ch211-154o6.3
gene name LOC106605084
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39449495 ~ 39465606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036948058.1
ATGTAGCACCTTAATCCTCCAATACAATCTTGCAGGTTACATTTTATATGATTACAGTCTCGGTCGTGAGTGAGTTCAATTGAGGCCAACCTAGCTGGAGCACACCAAGACTGAACAGCAGATCATTAAATCATTTCACCCATGTGAGATAGAGCATAGGCTCGCTAGATCACAATCTTCGGAAATCTAGTGGTAAAACAACTTGCGTTCTCATTCGGTTTTGGACGAGTTTTAGATCAACCTCATCTACACTGGCACTAATTGAATACATCAAATATCTCCAGGAAGGCGGAGCTCCGCACCAGATTGGCTGAACTTCTGCTGCAGCTTTCTGGCCCCCAGCAAACTCCGGGGATTGTGGGAGGAGGAAAACATGAGAAGATGAAAAGACAAGtTGAAGCCACCTCTGAGGCTCTTCCATCACACAGCCCCTCTGCTACCAAGATCCCCAAGGGAGAAGCAGAGCCGACAGGCCGACAGAAGAAGACAGGCAGTCAGAAGGAGACGGTAACaaggggagagacaggaagaaaggaggagacaggaggacggagagagacaggagcaggGGAAGAGCAGTCAGAGCCCTGTCTAGCTGTGACCGACACAAGCCCCAAGGAAAACCAGGAAGATGCCGAGTTTACATCTCTCAAAGCATCATGGGAGAAAGCCAAGTTTCGCTTGAGGTCGCTGGAGGGTCACAGTGACATCGTCACCTGTGTGGTTGCTGTTGACAACCTGGTGATCTCCGGCAGtcgagACACAACAGTAAAGGTGTGGCACGTTCCTACGGCAACCGAGCAGCGGAATCTGGGAGGTCACACTGGTGGAGTCACCTGTCTATCTGCCCCTCCGCCTGAATACTGTAGGAGACTCGcctgggAACTGTCTCTGGGAGACAAGGAGAGGTTCATCCTGAGTGGTTCAGCGGACTGTTGTGTGAGGATCTGGGCTTTAAGCACTGgcCAGTGTGTAAAGTCCATCTACACCTTTAACGCGGTGACTGCTCTCTGCTTTGTGCCTGAAGGCGATGGCTACATCATCACAGGATCAGatGGGGGTAAAGTCCAGGCCTGGAGCTGGCAAACCATGGACAACTGTCAATCAATCAACGCCCATGAGGAGGCTGTGACCTCCCTACAGTCCCAGGGTCCCCTGGTGTTCAGCAGCTCAGCAGAGGGTGGGGTGTCTGTGTGGGAGGGGCTCTGCACCAACCGCGACCCCCTGCAGCTGTTACATCATTGGGACGCAACGGTAACGGGCTGCGGGAGTCAGGAAGGTCGTCTGACCCTCAGTCCCCGTGGTGACAGGCTCTTCGTTGCCTACGGCAGAGCCAACCTTAGGATTCTCAACTGGAGGACAGGCACCGTGTCCAGGCTAACCAATCACAGCAGCATCGCTGGAGTAACAGATTGTGTACATCAGACAGGGGGACTCCTCATTGGCTCATGCTATGATTTGACAAATGGGGAAAGCACCTTGAACTtGTTCTCTCTACCTCAGTGCAGGTACCTGGCCTCGCTGACCTGGGCGGATGCTCCGAGAATCCTTTGCTTTGCGGCGTGGCTCACGGGCAGTGGGGGTCACCGCTGGGTCACCGGAGGTCGCGCCCTTACGGTGTGGGAGCAGCTCCCCAGCTCCGGGAAGCAGAGGGGTGATGTCACAACGAAGCGAGACAACCGATTGGACGCCTCCCTGATAGAATCAGAGGGAGATTCCGAGGACGAGGAGGACAGTGATGATTACGATGATGACAAAGAAGAGGACTACACATCCCAAGATGCACCAGAGTCGGGCTCAACGTCGTGGCTTCGCTGTGTTCTCCAGTGAGAGCAAGTTTCTCGCCGCCACCATGCCCAAGACGCTGCTCCTCGCAGCGAAGTAACGAAGGCTagaggaagggagtgagggggacagaggagaacgatggggggtggggggggtgtgtGACAGATTGAGAGAGTGGCGGAGGTGGAAAGAGAGCATACGGAGAGGGAGTTAGTGCGAGCGAGAGACAGATCATTTTCTATGTAAATGTTGTCGTTTCATGTATGCAATAAAGCTGTCATACTGTGA
>XM_021562215.2
CATAGATCATCTCCCGGGAAAAACCACTGCTCATTATGTGGTGAAGATTAGCGAATTTGCGCAGATCCTTGCTCAAATGTATCCCCTCAAACACGCTCACACAGGCTATCCACCATTGTTGTCATCAGCGATGAGACACGTCTATGGAAACGATTGACTGGGCAGAGAAAGGACAACAAACTAGTGAAACACGATCTCCAGGAAGGCGGAGCTCCGCACCAGATTGGCTGAACTTCTGCTGCAGCTTTCTGGCCCCCAGCAAACTCCGGGGATTGTGGGAGGAGGAAAACATGAGAAGATGAAAAGACAAGtTGAAGCCACCTCTGAGGCTCTTCCATCACACAGCCCCTCTGCTACCAAGATCCCCAAGGGAGAAGCAGAGCCGACAGGCCGACAGAAGAAGACAGGCAGTCAGAAGGAGACGGTAACaaggggagagacaggaagaaaggaggagacaggaggacggagagagacaggagcaggGGAAGAGCAGTCAGAGCCCTGTCTAGCTGTGACCGACACAAGCCCCAAGGAAAACCAGGAAGATGCCGAGTTTACATCTCTCAAAGCATCATGGGAGAAAGCCAAGTTTCGCTTGAGGTCGCTGGAGGGTCACAGTGACATCGTCACCTGTGTGGTTGCTGTTGACAACCTGGTGATCTCCGGCAGtcgagACACAACAGTAAAGGTGTGGCACGTTCCTACGGCAACCGAGCAGCGGAATCTGGGAGGTCACACTGGTGGAGTCACCTGTCTATCTGCCCCTCCGCCTGAATACTGTAGGAGACTCGcctgggAACTGTCTCTGGGAGACAAGGAGAGGTTCATCCTGAGTGGTTCAGCGGACTGTTGTGTGAGGATCTGGGCTTTAAGCACTGgcCAGTGTGTAAAGTCCATCTACACCTTTAACGCGGTGACTGCTCTCTGCTTTGTGCCTGAAGGCGATGGCTACATCATCACAGGATCAGatGGGGGTAAAGTCCAGGCCTGGAGCTGGCAAACCATGGACAACTGTCAATCAATCAACGCCCATGAGGAGGCTGTGACCTCCCTACAGTCCCAGGGTCCCCTGGTGTTCAGCAGCTCAGCAGAGGGTGGGGTGTCTGTGTGGGAGGGGCTCTGCACCAACCGCGACCCCCTGCAGCTGTTACATCATTGGGACGCAACGGTAACGGGCTGCGGGAGTCAGGAAGGTCGTCTGACCCTCAGTCCCCGTGGTGACAGGCTCTTCGTTGCCTACGGCAGAGCCAACCTTAGGATTCTCAACTGGAGGACAGGCACCGTGTCCAGGCTAACCAATCACAGCAGCATCGCTGGAGTAACAGATTGTGTACATCAGACAGGGGGACTCCTCATTGGCTCATGCTATGATTTGACAAATGGGGAAAGCACCTTGAACTtGTTCTCTCTACCTCAGTGCAGGTACCTGGCCTCGCTGACCTGGGCGGATGCTCCGAGAATCCTTTGCTTTGCGGCGTGGCTCACGGGCAGTGGGGGTCACCGCTGGGTCACCGGAGGTCGCGCCCTTACGGTGTGGGAGCAGCTCCCCAGCTCCGGGAAGCAGAGGGGTGATGTCACAACGAAGCGAGACAACCGATTGGACGCCTCCCTGATAGAATCAGAGGGAGATTCCGAGGACGAGGAGGACAGTGATGATTACGATGATGACAAAGAAGAGGACTACACATCCCAAGATGCACCAGAGTCGGGCTCAACGTCGTGGCTTCGCTGTGTTCTCCAGTGAGAGCAAGTTTCTCGCCGCCACCATGCCCAAGACGCTGCTCCTCGCAGCGAAGTAACGAAGGCTagaggaagggagtgagggggacagaggagaacgatggggggtggggggggtgtgtGACAGATTGAGAGAGTGGCGGAGGTGGAAAGAGAGCATACGGAGAGGGAGTTAGTGCGAGCGAGAGACAGATCATTTTCTATGTAAATGTTGTCGTTTCATGTATGCAATAAAGCTGTCATACTGTGA
>XM_021562210.2
AGTCAGACTGCGCAGGATCACTGATCTACATAGATCATCTCCCGGGAAAAACCACTGCTCATTATGTGGTGAAGATTAGCGAATTTGCGCAGATCCTTGCTCAAATGTATCCCCTCAAACACGCTCACACAGGCTATCCACCATTGTTGTCATCAGCGATGAGACACGTCTATGGAAACGATTGACTGGGCAGAGAAAGGACAACAAACTAGTGAAACACGATTAAGGGTTTCAGATGGGGGAGGTGAGAAAGCTCCAGAAGAAATTGAGACAGATTGAGAATCTGGAGATCAACATTTCTCAATCTCTCACTCCAGAAGAAAGAGTTAAGATCTCCAGGAAGGCGGAGCTCCGCACCAGATTGGCTGAACTTCTGCTGCAGCTTTCTGGCCCCCAGCAAACTCCGGGGATTGTGGGAGGAGGAAAACATGAGAAGATGAAAAGACAAGtTGAAGCCACCTCTGAGGCTCTTCCATCACACAGCCCCTCTGCTACCAAGATCCCCAAGGGAGAAGCAGAGCCGACAGGCCGACAGAAGAAGACAGGCAGTCAGAAGGAGACGGTAACaaggggagagacaggaagaaaggaggagacaggaggacggagagagacaggagcaggGGAAGAGCAGTCAGAGCCCTGTCTAGCTGTGACCGACACAAGCCCCAAGGAAAACCAGGAAGATGCCGAGTTTACATCTCTCAAAGCATCATGGGAGAAAGCCAAGTTTCGCTTGAGGTCGCTGGAGGGTCACAGTGACATCGTCACCTGTGTGGTTGCTGTTGACAACCTGGTGATCTCCGGCAGtcgagACACAACAGTAAAGGTGTGGCACGTTCCTACGGCAACCGAGCAGCGGAATCTGGGAGGTCACACTGGTGGAGTCACCTGTCTATCTGCCCCTCCGCCTGAATACTGTAGGAGACTCGcctgggAACTGTCTCTGGGAGACAAGGAGAGGTTCATCCTGAGTGGTTCAGCGGACTGTTGTGTGAGGATCTGGGCTTTAAGCACTGgcCAGTGTGTAAAGTCCATCTACACCTTTAACGCGGTGACTGCTCTCTGCTTTGTGCCTGAAGGCGATGGCTACATCATCACAGGATCAGatGGGGGTAAAGTCCAGGCCTGGAGCTGGCAAACCATGGACAACTGTCAATCAATCAACGCCCATGAGGAGGCTGTGACCTCCCTACAGTCCCAGGGTCCCCTGGTGTTCAGCAGCTCAGCAGAGGGTGGGGTGTCTGTGTGGGAGGGGCTCTGCACCAACCGCGACCCCCTGCAGCTGTTACATCATTGGGACGCAACGGTAACGGGCTGCGGGAGTCAGGAAGGTCGTCTGACCCTCAGTCCCCGTGGTGACAGGCTCTTCGTTGCCTACGGCAGAGCCAACCTTAGGATTCTCAACTGGAGGACAGGCACCGTGTCCAGGCTAACCAATCACAGCAGCATCGCTGGAGTAACAGATTGTGTACATCAGACAGGGGGACTCCTCATTGGCTCATGCTATGATTTGACAAATGGGGAAAGCACCTTGAACTtGTTCTCTCTACCTCAGTGCAGGTACCTGGCCTCGCTGACCTGGGCGGATGCTCCGAGAATCCTTTGCTTTGCGGCGTGGCTCACGGGCAGTGGGGGTCACCGCTGGGTCACCGGAGGTCGCGCCCTTACGGTGTGGGAGCAGCTCCCCAGCTCCGGGAAGCAGAGGGGTGATGTCACAACGAAGCGAGACAACCGATTGGACGCCTCCCTGATAGAATCAGAGGGAGATTCCGAGGACGAGGAGGACAGTGATGATTACGATGATGACAAAGAAGAGGACTACACATCCCAAGATGCACCAGAGTCGGGCTCAACGTCGTGGCTTCGCTGTGTTCTCCAGTGAGAGCAAGTTTCTCGCCGCCACCATGCCCAAGACGCTGCTCCTCGCAGCGAAGTAACGAAGGCTagaggaagggagtgagggggacagaggagaacgatggggggtggggggggtgtgtGACAGATTGAGAGAGTGGCGGAGGTGGAAAGAGAGCATACGGAGAGGGAGTTAGTGCGAGCGAGAGACAGATCATTTTCTATGTAAATGTTGTCGTTTCATGTATGCAATAAAGCTGTCATACTGTGA

Function

NR:

description
platelet-activating factor acetylhydrolase IB subunit alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036948058.1 False 2076 mRNA 0.54 13 39449495 39465029
XM_021562215.2 False 1993 mRNA 0.55 13 39449495 39465578
XM_021562210.2 True 2131 mRNA 0.54 14 39449495 39465606

Neighbor

gene id symbol gene type direction distance location
LOC110489516 LOC106605085 coding downstream 161 39442306 ~ 39449334 (-)
LOC100301666 LOC100301666 coding downstream 36925 39410248 ~ 39412570 (-)
LOC110489468 LOC106605089 coding downstream 83623 39350932 ~ 39365872 (-)
LOC110489429 LOC106605091 coding downstream 101984 39338189 ~ 39347511 (-)
LOC110489325 tpi1b coding downstream 215726 39228812 ~ 39233769 (-)
LOC110501545 NA coding upstream 21949 39487555 ~ 39497561 (-)
LOC118940039 NA coding upstream 34131 39499737 ~ 39501488 (-)
nr0b2a LOC106605079 coding upstream 88197 39553803 ~ 39555433 (-)
LOC110489623 zadh2 coding upstream 348517 39814123 ~ 39821845 (-)
LOC110489634 LOC106605073 coding upstream 538164 40003770 ~ 40078999 (-)
G141082 NA non-coding downstream 21716 39427547 ~ 39427779 (-)
G141081 NA non-coding downstream 23061 39422834 ~ 39426434 (-)
G141079 NA non-coding downstream 28357 39420812 ~ 39421138 (-)
G141077 LOC100136501 non-coding downstream 44045 39404057 ~ 39405450 (-)
G141073 NA non-coding downstream 49638 39399623 ~ 39399857 (-)
G141090 NA non-coding upstream 4054 39469660 ~ 39469876 (-)
G141091 NA non-coding upstream 4796 39470402 ~ 39470760 (-)
G141108 NA non-coding upstream 50916 39516522 ~ 39550549 (-)
G141138 NA non-coding upstream 90352 39555958 ~ 39556282 (-)
G141147 NA non-coding upstream 95318 39560924 ~ 39561351 (-)
G140879 NA other downstream 385077 39063862 ~ 39064418 (-)
G140479 NA other downstream 621300 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1400829 38046700 ~ 38048666 (-)
G139231 NA other downstream 1696537 37747441 ~ 37752958 (-)
LOC110501508 LOC106605132 other downstream 1985737 37442359 ~ 37463839 (-)
G141363 LOC106605077 other upstream 298327 39763933 ~ 39765473 (-)
LOC110489653 LOC106605072 other upstream 759016 40224622 ~ 40298333 (-)
G142918 NA other upstream 1397608 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 2248940 41714269 ~ 41730507 (-)
G145010 NA other upstream 3241212 42706818 ~ 42707279 (-)

Expression


Co-expression Network