RNA id: TU160231


Basic Information

Item Value
RNA id TU160231
length 621
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC110489105
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38046700 ~ 38048666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGAAGCTCAGCCGCAGACAAGATAGGTGACTGAAGCTGACCCCATTTGATTGACATGTCGAACCCAGTCATCACCCACCAGCCAGGAGCAGGCTCTTATGGGACAAATGTGCAGACTGGCGAGTGGAGCACTGGGCTGTGCTCCTGCTGCAGTGACATCCTAGTCTGTGCCATGGGCTTCATCTGCCCACTAGCATTGAGTTGCTACACAGCTAACAAGTATGGTGAGAACGCATGCCTGGCCTGTGTTCCAGGAGGCATGACAGCCATGAGGACACACATGAGATTGACCTATGGGATTCAGGGGACGATATGCAACGATGCGTTGATGACCTGTTGCTGTGGATTCTTTGAGATGTGCAGGATGGCCCGTGAAATTCGCATCAGGAATGGCGACGTTTGACTTGTACAGTCAATTGAAGACATTTTCAAGTGGAAGTTAAATTAACCTCATGTCACATATTGTTGATACAAATCGTCATTGTTATACTATGTACATTTTAACTTTTGTATTGATTAAATTTGACCCCCTACTCTCAAACAGTACTGCGCAAAGAATTCATAGCACCATGTATGAACCAAAGATGTACAATAAAGTTTTGTTTTTTCTTgtttccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160236 lncRNA downstream 40385 38003061 ~ 38006317 (-) True LOC110489088
TU160246 lncRNA downstream 46408 37970299 ~ 38000294 (-) True LOC110489074
TU160257 lncRNA downstream 98585 37947759 ~ 37948117 (-) True G139333
TU160228 lncRNA downstream 134877 37906950 ~ 37911825 (-) True G139309
TU160229 lncRNA downstream 140187 37902594 ~ 37906515 (-) True G139310
TU160310 lncRNA upstream 5427 38053774 ~ 38054030 (-) True G139385
TU160311 lncRNA upstream 6560 38054907 ~ 38055140 (-) True G139386
TU160241 lncRNA upstream 16691 38065038 ~ 38066918 (-) True G139318
TU160318 lncRNA upstream 19390 38067737 ~ 38067937 (-) True G139393
TU160363 lncRNA upstream 48537 38096884 ~ 38100499 (-) True G139437
LOC110501529 mRNA downstream 263 38035966 ~ 38046439 (-) True LOC110501529
XM_021561660.2 mRNA downstream 17296 38003059 ~ 38029406 (-) False LOC110489088
XM_036947774.1 mRNA downstream 46378 37920689 ~ 38000324 (-) False LOC110489074
XM_021561641.2 mRNA downstream 105892 37920689 ~ 37940810 (-) False LOC110489074
XM_021561577.2 mRNA downstream 223184 37818114 ~ 37823518 (-) True LOC110489027
LOC110489095 mRNA upstream 550 38048897 ~ 38053364 (-) True LOC110489095
XM_021561705.2 mRNA upstream 37818 38086165 ~ 38087398 (-) True LOC110489123
XM_021561718.2 mRNA upstream 330845 38379192 ~ 38494341 (-) True LOC110489131
XM_021561745.2 mRNA upstream 692380 38740727 ~ 38751229 (-) False LOC110489143
XR_002468535.2 mRNA upstream 803886 38852233 ~ 38854258 (-) True LOC110489186
TU160127 other downstream 293744 37747441 ~ 37752958 (-) True G139231
TU159561 other downstream 582944 37460874 ~ 37463758 (-) True LOC110501508
TU158919 other downstream 1197357 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 1218305 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 1407697 36634193 ~ 36639005 (-) True G137839
TU161480 other upstream 779562 38827909 ~ 38828195 (-) True G140479
TU161916 other upstream 1015515 39063862 ~ 39064418 (-) True G140879
TU162487 other upstream 1715586 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 1715586 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 1716160 39764507 ~ 39765170 (-) False G141363

Expression Profile