RNA id: XM_021561641.2


Basic Information

Item Value
RNA id XM_021561641.2
length 2012
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110489074
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37920689 ~ 38000324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTTTTGGCAGTTCCTCATtcctccttttttctctctctttctgagagGTTGTATGACAGCTTTTCCTGCTGCTGGCAGAGAGAGTGGAGACCGTGAGGGAGAGGGAAAGTCTGTTATTCAGAACAAGCCACCACCTCTTCCCTATAGGTTTCTCTACACGCTCCGGGACTGGAGAACAGCAGTAGTCACACACAAGGAACGAGCAAGATTGACAAAGTCAGGATTGCTTGTTGTGTTGATTTTGCCAACCTGGATGCGAGAAGTGGACTGTTTTGACTGAGGCTAGCATTGAGCCTTACCTTATCTCGACAGGAATTAACTTTCCTAAGAGGACACTTTGACAGTACTACTTACTTGGGCGGCCAAATGAACTGTTCGGCCTGAGGAGAGAAGGGCACGGGGCGTAgatccagagagacagagagagagggtagctCAATCATTCAGCAAACCTCTCCACTTCCATCATGAGCTGGGACTGAATAGTTACCACTACAGCTTCATTTTATGGTGTAAGCAAAGGCTACTGGATATATCGTCAGCATGGACGCAAAGAGGAAAGAGATGGACCTCCTGAGCAACAGCATAGCTGCCTATGCACACATCAaagAGAACCCAGAGAGCTTTGGGCTGTACTTTGTGATTGGGGTTTGTTTTGGCCTGGTCCTCACCCTCTGCCTCCTGGTCATCCGGATCTCCTGCAAGCCCCGCACCAACATCCCGGCCTCCACGCCCGAGAAGAAACACCTGAAGGACTTCAGTGAGGACGAATGTGATGAAGATAgcgaggatgaggatgaggaagaggagggtgacGTCGAAGCACCTGCCCCCATGCCCACCACAGAGATTCCCATTGgcaaccaccacaaccacagccAATCGGACGGGACACTGAGCGTTAACGTGTTCACGTCGGCCGAGGAGCTAGAGAGGGCACAGCGATTGGAGGAGAGGGAGCGAATCATACGGGAGATCTGGAGGAATGGGCAGCCTGATATCCTGGGTTCAGGAACAGGCACTATAGGTCGGGTGCACTACTACTAACGTCCAGTACTACTGGGCCACTGAATGGACATACTATATAGAACTATGGTGCTATGGAATCAGGGGGTACACTGTGGTCCACACCCGCCAAAGACAGATTCCCATGAGGGGTGTCACTCATGCTGTTGTATACAGACAGGTCACAAGTGGCGTGCTACTTCGATCTGGGGTGTATTCAGTGATGTGAAATCTTCtgaatgttgcagatagaaatataatgaatagagcTGACAAAATTCACTATTCTACCTGAAAGACAAACATATCTGTTCTGCACGATAAGTTTCTATCTGAACATTCTGTAACGTGACATCCCTCTGAACAGGCCCTTGAAGTGTAAGTCTTGACTCTAACACTATGTGATAGTGGTGTGCTGTGTGAATGTATTTCCCCCATCAACATTTGTCACCTACTACCACTGCCATAATGGAGTTATACCACAAGGCACCTTTGAGACCAGTTCTGCTGCTTTGTGATTTAGGCATGTGAACGGGAACATTTATCATAATTGGAGTCTACAGTGTGGAGAGATGCCTGAACAAAGTATTGCCCTTAGAAAAACACAAAGGGAGTAAGGAAGGACTAATACAGCCATTGACAAATAGCCAGAGATACTGTAGGGAGTAGGGACCAAGTATTTTGCAATGAGAGGTCACTTTCTTTTGTTTGCTATGGGGCCATGTTTCCCTCAACACTGGTGAGTTTACAGCGGGACAGTGCCGTGAGCTGTTTGTCATTATATTAGGAAATTATCCTCAATGCTTTAGAGTGGTCTTGGAACCTTCTGTGAGAAAATAGCTTTGCCTAAGTAAGAAAATAGAAATGGATTCGGTGAGACGATTTTTCAAAGTCATTTTGGAATTGGACTGCTCAGTTTGCTCAGTTTAAGAACACAGTTTTAGGCTGTTTTCAGAACCAATTACACTAGGGGAAATTAAGTAATTAAAGTGGGAAACTCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160228 lncRNA downstream 8864 37906950 ~ 37911825 (-) True G139309
TU160229 lncRNA downstream 14174 37902594 ~ 37906515 (-) True G139310
TU160152 lncRNA downstream 146505 37773682 ~ 37774184 (-) True G139256
TU160139 lncRNA downstream 156976 37762548 ~ 37763713 (-) True G139243
TU159840 lncRNA downstream 223336 37697059 ~ 37697353 (-) True G139000
TU160257 lncRNA upstream 6949 37947759 ~ 37948117 (-) True G139333
TU160246 lncRNA upstream 29489 37970299 ~ 38000294 (-) True LOC110489074
TU160236 lncRNA upstream 62251 38003061 ~ 38006317 (-) True LOC110489088
TU160310 lncRNA upstream 112964 38053774 ~ 38054030 (-) True G139385
TU160311 lncRNA upstream 114097 38054907 ~ 38055140 (-) True G139386
XM_021561577.2 mRNA downstream 97171 37818114 ~ 37823518 (-) True LOC110489027
XM_036933861.1 mRNA downstream 110634 37806759 ~ 37810055 (-) True LOC110489018
XM_036947707.1 mRNA downstream 113897 37805009 ~ 37806792 (-) True LOC118939584
XM_036947701.1 mRNA downstream 124301 37791239 ~ 37796388 (-) True LOC118939581
XM_021561545.2 mRNA downstream 138507 37777404 ~ 37782182 (-) True LOC110489008
XM_021561660.2 mRNA upstream 62249 38003059 ~ 38029406 (-) False LOC110489088
LOC110501529 mRNA upstream 95156 38035966 ~ 38046439 (-) True LOC110501529
XM_021561695.2 mRNA upstream 105890 38046700 ~ 38048310 (-) False LOC110489105
XM_021561685.1 mRNA upstream 105890 38046700 ~ 38048406 (-) False LOC110489105
LOC110489095 mRNA upstream 108087 38048897 ~ 38053364 (-) True LOC110489095
TU160127 other downstream 167731 37747441 ~ 37752958 (-) True G139231
TU159561 other downstream 456931 37460874 ~ 37463758 (-) True LOC110501508
TU158919 other downstream 1071344 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 1092292 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 1281684 36634193 ~ 36639005 (-) True G137839
TU160230 other upstream 105892 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 105892 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 105892 38046702 ~ 38048666 (-) False LOC110489105
TU160232 other upstream 105927 38046737 ~ 38048347 (-) True LOC110489105
TU161480 other upstream 887099 38827909 ~ 38828195 (-) True G140479

Expression Profile