RNA id: TU160228


Basic Information

Item Value
RNA id TU160228
length 1107
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G139309
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37906950 ~ 37911825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACCCTATttatttactttagtttatttcatGTTACACTAGCAGTTTTAGCCCGAGAGGGAATATGCAGTCCATCACACATATTCAATGCCATTTTTAAAAATAGTTTGTTCCCATGGCAGTTTCAGAAGCCCACTCTCTCTAATGTGTTCCAGATGCTCTCCAGATGTGCTTTCCAGCTCACAGACTTCCCGGGCCGTGCCAGAAGCATGTCGCCAATGCCGAGACGGGGGAAACAGATCTATAGGGCTCACTCAAGAGAAGCCAAAGGCCTAAAATGCAGCTCCAGAACCATCTTCAGCTCCCTGACCTCAGCGTGTAGGCTGTCCAGACAAGGCTTCTCCTCCTGGGTTGCCCTGGCCTCCACTACAGCCTTGGGAAGTGCTAGCCTGGAAGGTACTGGATTCTTGGTAGGATGCTCAGGCTTGGATGGTGGTGAATGACTTTCTGAAATCTGTGGACTGGTGACGAGGGCTGATGGGGGTCGTCTCTGTGGGGGTTTGGCTCTGTTGGCTGTGGGGTGACTCAGTTTCTCAGGGGACACCTCCACTCCGTCAAACTGGTCCGAGTTGCTGTCCTCTGAACATTTTGGTGAAAGAGGAGGGAGATCGCCATTGGCTCTAATGGGGGAAAATAGGCATTTTTTTCAGAGAAAGTAAACTTTCATTTTTTCAGGCCTACACTGGTTGATTCATAAGGTTAACTAGACCCAAAAATCTATGATGTAAAGAAAGAAAACTGAAACATATGCTTCATTTTCTACAGTTGAGATTttcttttgatgaaaattgttgTGGTTTAGTGTGGAAAAAGTGGCATCCTGTTTCCTGTTGCATGTTTTAAGAGGCAGGTGGTGATGTACTGCATATTGAAACCTCAGTGAGTTAATGTTTAGCCAAGCATTAAGACTTCCCCTTTTAACGTCCACACCCTCACTAGAACAAAAAGACGCAATAGCTTTTAATAAAATATACAAACTTGTTTGACCTGATATAATCCAAAGTGAATTTGACAAATAAGCAAAATGCTTTTAGCCAAGGCCACACTATCATTGCATTGCCTCCAACATGTGACAGTTACTTGGAAAGAACAGTCCGAATGGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160229 lncRNA downstream 435 37902594 ~ 37906515 (-) True G139310
TU160152 lncRNA downstream 132766 37773682 ~ 37774184 (-) True G139256
TU160139 lncRNA downstream 143237 37762548 ~ 37763713 (-) True G139243
TU159840 lncRNA downstream 209597 37697059 ~ 37697353 (-) True G139000
TU159819 lncRNA downstream 224579 37682067 ~ 37682371 (-) True G138979
TU160257 lncRNA upstream 35934 37947759 ~ 37948117 (-) True G139333
TU160246 lncRNA upstream 58474 37970299 ~ 38000294 (-) True LOC110489074
TU160236 lncRNA upstream 91236 38003061 ~ 38006317 (-) True LOC110489088
TU160310 lncRNA upstream 141949 38053774 ~ 38054030 (-) True G139385
TU160311 lncRNA upstream 143082 38054907 ~ 38055140 (-) True G139386
XM_021561577.2 mRNA downstream 83432 37818114 ~ 37823518 (-) True LOC110489027
XM_036933861.1 mRNA downstream 96895 37806759 ~ 37810055 (-) True LOC110489018
XM_036947707.1 mRNA downstream 100158 37805009 ~ 37806792 (-) True LOC118939584
XM_036947701.1 mRNA downstream 110562 37791239 ~ 37796388 (-) True LOC118939581
XM_021561545.2 mRNA downstream 124768 37777404 ~ 37782182 (-) True LOC110489008
XM_021561641.2 mRNA upstream 8864 37920689 ~ 37940810 (-) False LOC110489074
XM_036947774.1 mRNA upstream 8864 37920689 ~ 38000324 (-) False LOC110489074
XM_021561660.2 mRNA upstream 91234 38003059 ~ 38029406 (-) False LOC110489088
LOC110501529 mRNA upstream 124141 38035966 ~ 38046439 (-) True LOC110501529
XM_021561695.2 mRNA upstream 134875 38046700 ~ 38048310 (-) False LOC110489105
TU160127 other downstream 153992 37747441 ~ 37752958 (-) True G139231
TU159561 other downstream 443192 37460874 ~ 37463758 (-) True LOC110501508
TU158919 other downstream 1057605 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 1078553 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 1267945 36634193 ~ 36639005 (-) True G137839
TU160230 other upstream 134877 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 134877 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 134877 38046702 ~ 38048666 (-) False LOC110489105
TU160232 other upstream 134912 38046737 ~ 38048347 (-) True LOC110489105
TU161480 other upstream 916084 38827909 ~ 38828195 (-) True G140479

Expression Profile