RNA id: TU160139


Basic Information

Item Value
RNA id TU160139
length 726
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G139243
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 37762548 ~ 37763713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGACAACAATGTTCTCTTTAATAAGACTCCCGATACTCCCTCTGACCCTTCAAtacacaacaaaatgtatttATAGCATATACACACACCAGCATTTCATTTTCAAACGCATTAGAATCTGTGGAATTTCGATGGGAGGTGGCAGCATATCATGCTTCTTAATTTATTCCACAGACCCCTCCCTCATTTAGTCCAACtctcaagttttcatttacattaTTCACATACAACTGTACCCAGTCCTTACATTTCTCTTAAATAAACTAAACATTAGAAACAAAAAGCCAACTCACTTCTCTTTCAACTCGTCAGCACAATAATATCAACAATTACTCATTTGTgtcaaatgtgtatttttttacCCCCAGGGCTACTGAAATCTACCATGGATGATACTGCTGTGGAAGAATTGATGCTGCGTTATCTTCTACCATCTACAAATGGTAACACTGATGCACCCTGTCGGGTGGCGATGACGTCAtatcctgtttttgtgttttgcTTGTGTCTTTTTTGCAGAATGCAGAGTTGTtgcttcttcttcatcttcttctgcCCTTTTCTTCTGCCCTTGTTTTTTTGGGCCTAGAAAGCAGTCTGTGATTGGTTTGGCACAGGTCATTGGGGATGTGCACCTTCGGGAAGAGGGGGGCCCTCTACCCGTACGAGTGGAGGCTGGATTCGGGAAGGTGCGGGAAGGGGGGGCCTAAGAATCGCCTTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159840 lncRNA downstream 65195 37697059 ~ 37697353 (-) True G139000
TU159819 lncRNA downstream 80177 37682067 ~ 37682371 (-) True G138979
TU159818 lncRNA downstream 80866 37681368 ~ 37681682 (-) True G138978
TU159808 lncRNA downstream 94650 37667638 ~ 37667898 (-) True G138968
TU159804 lncRNA downstream 97211 37665070 ~ 37665337 (-) True G138964
TU160152 lncRNA upstream 9969 37773682 ~ 37774184 (-) True G139256
TU160229 lncRNA upstream 138881 37902594 ~ 37906515 (-) True G139310
TU160228 lncRNA upstream 143237 37906950 ~ 37911825 (-) True G139309
TU160257 lncRNA upstream 184046 37947759 ~ 37948117 (-) True G139333
TU160246 lncRNA upstream 206586 37970299 ~ 38000294 (-) True LOC110489074
XR_005036591.1 mRNA downstream 285786 37463985 ~ 37476762 (-) False LOC118939571
XR_005036592.1 mRNA downstream 285786 37463985 ~ 37476762 (-) False LOC118939571
XM_036947585.1 mRNA downstream 298709 37442359 ~ 37463839 (-) False LOC110501508
XM_021561473.2 mRNA downstream 424941 37332647 ~ 37337607 (-) True LOC110488968
XR_002475036.2 mRNA downstream 489573 37264176 ~ 37272975 (-) True LOC110533765
XM_021561545.2 mRNA upstream 13691 37777404 ~ 37782182 (-) True LOC110489008
XM_036947701.1 mRNA upstream 27526 37791239 ~ 37796388 (-) True LOC118939581
XM_036947707.1 mRNA upstream 41296 37805009 ~ 37806792 (-) True LOC118939584
XM_036933861.1 mRNA upstream 43046 37806759 ~ 37810055 (-) True LOC110489018
XM_021561577.2 mRNA upstream 54401 37818114 ~ 37823518 (-) True LOC110489027
TU160127 other downstream 9590 37747441 ~ 37752958 (-) True G139231
TU159561 other downstream 298790 37460874 ~ 37463758 (-) True LOC110501508
TU158919 other downstream 913203 36844933 ~ 36849345 (-) True pnrc2
TU158866 other downstream 934151 36825866 ~ 36828397 (-) False G138080
TU158620 other downstream 1123543 36634193 ~ 36639005 (-) True G137839
TU160230 other upstream 282989 38046702 ~ 38048608 (-) False LOC110489105
TU160231 other upstream 282989 38046702 ~ 38048347 (-) False LOC110489105
TU160233 other upstream 282989 38046702 ~ 38048666 (-) False LOC110489105
TU160232 other upstream 283024 38046737 ~ 38048347 (-) True LOC110489105
TU161480 other upstream 1064196 38827909 ~ 38828195 (-) True G140479

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020055 False 3160 mRNA 0.51 19 NC_007127.7 35661771 ~ 35773224 (+)