RNA id: LOC110489623


Basic Information

Item Value
RNA id LOC110489623
length 5292
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110489623
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39814123 ~ 39821845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATCTTCTTAATTGTCTTGTTTTTCCTCTGATTAAAATTGAAATGACTTGACAAAGGAATGCTTGCATCAGTAGGCTAATATCAAAATGTTGCTTTGAAATATTGATCCACAAACTTCATGCGGAATGTTATGGCAATTAGTCAATTATTACAAAACTGTTACTAGGTTAGGCTATATTACTACAATtagctcatcatcatcatcatcatatgaAATAAACTTACACCAACTTTATTTTGCCTGACATATGCTATCCTATGTCAAACCCAACATGGCAATGCTTTGGACTTGCATATTTTTGGAACATTCGGACTGAAGTTTCCTAATGTGAGAGCACCATAATTTACGCATGCTTGAGGAGAAAATATATCCTGCAGATAATAGCCTTTTAACGGTGCTTGTTAATACCTTGAATGGTTGTGGTTGGCACTGGCTGTATTGGCAATTCTTTGGATTTTTGTGTACAATCGTCGAGGATATGTTTGAGACTACGATTGATTTGTTTCACCTTTACTAGGAAGTGTGTCATGTCCAGGAAGGGGAGGGACTCCAAAGAATACAAGCCGCTACAGTGACAGCTGCTACAAGATTGCGCCGTgctatagcctagttatcatcaaGGCAAACATTCCAAAAGCACGCTATTGCGTGTCAATCTTATGCGACAAAACTGCGCTGGTAATATTGTTTTAATTGCAATGCATCATTGCATTGGCGTGGCCTACCCTGCTACGTGAAGAAAGCCTAGCATAGGCTAACGATAAGCATATTGATATCAATGCACAGCCAGTGCCCGTGAACTTTGTCACATAATCCCTCCCTGGTGCAATGTCCACCTCTTTCTTGTTGAGAAACGGTAAGAGGGTGTTTTCGGTAATCGGCGGGGGGTGCAGAGGAACCGATGCACTTTCTAGAGTTCATTTCGTATCGCGCCGCTTCATTATAGATTTGTCATACTCCACGCACTTCATGGATTTTAAAGGTTCCTCGATACCGAGCTCCATGAAAAAGCTGGTCGTAACGAAGCTCAGCCAGAATTTCAGAGACGCCGTTGCCTTGCAAACTGTTCCAGTCCCGACACCTGGCGACGGGGACTTGCTTGTCAGAAATCGATTTGTTGGAATAAATGCCTCGGACATCAACTACTCAGCAGGCCGCTACGACCCTTCGGTGAAGCCACCGTTTGACGCCGGGTTTGAGGGCATTGGCGAGGTGGTCGGACTCGGCCTGAGTGCCAGCGCCCGCTACACCATTGGCGACACCGTGGCCTACTTTGCCGATGGGGCCTTTGCGGAGTACGGTGATACCCATGATCAAGACCGTACCCGTACCCGCGGTGAAGCCAGagttcctcaccctgctgttaagTGGTGCCACGGCCTATATCGCCATGAAGCGGCTTGGCGACCTGGTGAAGGGCGAGACGGTGCTGGTGACGGCCGCTGCTGGTGGCACAGGACAGTTTGCTGTGCAGTTCGCCAAACAGGCCGGCTGCCACGTTGTGGGCACCTGCTCCTCCAATGAGAAGGCTGGCTTCTTAAAGACCATTGGCTGCGACAGGCCCATCAACTACACGTCCGAGGACCTGAGCACCACGCTGCGCAAAGAGTACCCACAAGGCCTGGACGTAGTCTACGAGTCCATAGGTGGCAGAATGTTTGACATGGCGGTCAACAATCTGGCCAATGAGGGTAGGCTGATCGTGATCGGATTCATCTCAGTGTACCAAACGGCAACAGGGGTCCCAACTGTTAAAGGAGGAACTCTGCCCATGAAGCTGCTCCAGAAGTCAGCTAGTGTGAGGGGGTTCTTCCTACCTCACTTCCTGTCCGACTACAAGGAGGCGATGGGAAGCATGATGCAGATGTTTGCTAAAGGGAAGCTGGTGTGTGAAGTGGACTGTGGCGACATGGCCCCCGAGGGCCGTTTCATGGGACTGGAGTCCGTCTTTAGGGCTGTGGACTACATGTATGCTGGGAAAAACGTGGGaaaggtggtggttgaggtgacTCCACCCTCACTGGACAGCAAACTGTGGTTTGCCTTAATGGGAATGCACTGGAATTCTCAAACAAATctaatgtatgtatgtacaatGAAAGGAACAATGAAAATACAGAATctaatgtatgtatgtacattGAAATGAACAATGTAAGTATATATGTTGAAGGCAAATTACCCGAACTGTGACAATCTACATTACTCTGAATTTAATATATTTTTGAACAGTTTATTTCACCTGAATATATTTAGATATTACTAAAATGTTGTTCTGTTAGAGAACAGTTCCTTGTTTAATGTTTTAATGATTAGCTTTACTTTATTCAATAGAAAGTCCCAATAAATGAGGATCATACTTGTAGAGGGAAGATTGCTGGTGTAACAACATAGGTTATCTCAAGAAAATAATGCTGTACCCCTCTAGATCAAATGCCTCCCTCATTCtatctcgcacacacacacactcacttgttTCTTTGCTCTGTGCTCAAGACTAGAGCTAACTAAAATGTAACCATATTAACGTTTGTGTTGACAGTAACTAGACCCGTGTCTGCATTGACTGTCCACAGCTTACGCATGATTACAGCACTCCAGACAATGTACCAGCATATCAGCTGAACCTTCTGTTTACACAGCTGAGGACAATATTGCATAATGATCACATTTAGTGTTACCAGTTTAAACCTCTGTCATTCTTTTGGAATATAGGCCTAAGCATGCCCAGAGCAATTGACCcgtttagtcccccccccccccccccccccccccacacacgtATGTACGTACAGCATGCATAAACAGATAATTTattaaatatatgaatgagtcatCTTAAATCAACAGAACATATTGCACATTTCTCTATGTATTGTAGGTGTAGAGTAAGTTTTAAAATGGCTAATTTTGAGGAGTAATAACACGTGTAATTAACACTAATATCTAGATTACATTATTTATCTTACATTCTTGATTTTAgaatcacattttgttgtgtttggtTTTAGTAAGATCTGTTAATACTTGTCAGAACTGAATGCAGCATCAGGTGTGCTTGGTATTTTATAGCATGTATGTAGCTGATCGAAACAGCGTTCATATAATCCATCTTTCCATTCACATGCCCCAAGCTGACCATAATAAAAAATTAGTCCAGCTAACCAGAACTTGGGGTTGAAAATACCATTCTTCTTTCCCACAAGAAGCAGAAACCCACTTATATTGAATGTATTGTGGAATGCCCTCTGAGGTAGGCCTACAGTTTTCTTTTTTGTTTGTTACCGTGAGGATAAGGTTCCACTTGATGTTTTGGATTCTCTTTAAAGCCAATTCAcaaatttcattttttttgtcatttaaatATGGAACCCTTTTAAGCTAAATATCATGTTGTCGCCTATAGAGGTGAGGGTAGATTGGAGACTAGGTGGGATACAATCATCATGGAGAAATGCCTTATCTTACATTTTCCATATTAATTCTAAAACTATTTACAAGTTAATGTGGGGGTGTTATTCTGTGGCTTTTTTTAAGAAGTGAGAAAAGGTAATTAAAACATCTCTAAGACAATACGTTATCTATCAAGCCTAggaacacaaaaacaaacacctGTTTCCACCTGGGAGGGACGTCTGTGTGTTCATGCACTGTGAACATGCAATATCCTCCTCCAGGTGGCCACTCAAAAAAGATCTCGGTGTGAAATACGTTACAGGTGTGACCCCAGCATGCAAAGCCTCTACCTTCGCCAGGCAGGCAGCTCAGGAAATCAGAAACATACCCACCAGCCTGAAGCCATTTGAACCTGCACCAGtgtgtgtctcacacacacacacccatatgtGTTCCAAGAGAGAAGTGGTCTGTGTAATGCATACAGTGTATTTTTGTAGATTGGTTCTTACTATCTTtagtaaaaaattaaaaattaaaattaaGGTCCTCTTTGATTTCTACCCGTGTTAAATATATAAATGAAATTATCCATCTCTGCACCCATCATTGTAAGTGTTTCATAACAGTGCCACTGTACAAGCATACATGACTATGAGCAACCTGAAAGCTATTGTTAAGGCAGATGCTCTTACCGCTCGTAAAATGTATGGTTCAAGGCGTCATTGTAATGCAAGAGCATGCTCTCACACGCTAGTCACACAAAGGTGAGAGAGGTGATACAAATGTTCACTTGAATTTAACGTGCTTGAGTACTATTGCGTGCATACTCTGGATAGAGGTACGGACTGTCAATGTGTATCTGTCTTCAATTACCAACCGAGGCCTCACTCTGGTCCTCCGGGGCCCACCTGTAGCAGCCATGATTAGTGCGCATTCACAGTCCAATTAAAAGCACAGGACAACCTGGAGAAAACAACACTCTTTAATTGGCTTGTAGCTGTTAGCAGGCTCTTAACAAACCATATAGACACATACCTGTTCTGAGGTACATGACAAATGTTGGTGGAGTGACAAACATGTTTTGGAAAAGTGTCGCGTTTCTCAATGTAGTTTGAGAATATtagttattgttttttttattgcttAGACTATAGTTATGTTTTTTtgagatacagtatattacatccACCTTTAACCTGAGTATAGCCCTTAATTTAACCCTAAAAGTAAGATTGAAAATATTATATGGTAAATGTGAAACAACCACAACAATTGTGAGAGAAAAGTTCAAATCTAAAATAAATGTCCAAAAGTGCATGTCATGAATAGTTGTGATACTTGGTTTGCCAGAGATCTGTGCTTTGTGCATTTCGGATACACGCTCAAAATGGGATCTGTGACCTTTTTACAGCCTTGCTTTCAATTCAATTGAACCATATAATTGTTGATTAAATGAATAAATTGAAAATgctgtcaacagtttagtgaAATGCCAGTGTTGTAATACATCAAATCAATTTGATCAGCTGGGTACTCTATATATTCAATCAACCTCAGTGTTACTTTAGGCTCTGCCATCCATGTTCCTATACTGGCACACCTAACATAGACATCATTTGGATGGTGTGGTCTGGTATAACCTGGTGCCTTAGTGACTGACTCTGTCATGGCTCAGGTCCACTCTCAATTACTAAGAGTCACTCAGACCCCTCAACCACCATCACTCCTCCCCCTGTTACAAAACCTCACTGAACTAATTAGTCAATGCACACCCAAACACTAAGTTAAGGTAAAAACAGGTGACTTTCCGATatgtaataaaaaatatataataatatgttACTTTTACTCATGTTGTATTGCAtagaaataaactcagcaaaaaaaagaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162521 lncRNA downstream 25393 39788040 ~ 39788730 (-) True G141392
TU162518 lncRNA downstream 27744 39785904 ~ 39786379 (-) True G141389
TU162515 lncRNA downstream 29875 39784030 ~ 39784248 (-) True G141386
TU162500 lncRNA downstream 42519 39771312 ~ 39771604 (-) True G141371
TU162498 lncRNA downstream 44088 39769640 ~ 39770035 (-) True G141369
TU162995 lncRNA upstream 27549 39849394 ~ 39849831 (-) True G141833
TU163058 lncRNA upstream 143108 39964953 ~ 39965260 (-) True G141895
TU163076 lncRNA upstream 168604 39990449 ~ 39990754 (-) True G141913
TU163089 lncRNA upstream 186535 40008380 ~ 40013308 (-) False G141925
TU163091 lncRNA upstream 186535 40008380 ~ 40013614 (-) True G141925
XM_021562336.2 mRNA downstream 258690 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 312635 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 316562 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 348517 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 348545 39449495 ~ 39465578 (-) False si:ch211-154o6.3
XM_036948238.1 mRNA upstream 181925 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 403228 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 403228 40225073 ~ 40298251 (-) False LOC110489653
XM_036948273.1 mRNA upstream 403228 40225073 ~ 40298260 (-) False LOC110489653
XM_036948279.1 mRNA upstream 403228 40225073 ~ 40298260 (-) False LOC110489653
TU162491 other downstream 48650 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 48700 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 48953 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 48953 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 749705 39063862 ~ 39064418 (-) True G140879
TU163223 other upstream 402777 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other upstream 402777 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other upstream 402777 40224622 ~ 40241404 (-) False LOC110489653
TU164135 other upstream 1041369 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1892701 41714546 ~ 41730422 (-) True LOC110489860

Expression Profile