RNA id: TU162498


Basic Information

Item Value
RNA id TU162498
length 396
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G141369
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39769640 ~ 39770035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actttgcgaccttttgccacatttcaggcttcaaacataaagatacaaaactgtattttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaacaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162493 lncRNA downstream 2575 39766844 ~ 39767065 (-) True G141364
TU162486 lncRNA downstream 3177 39766021 ~ 39766463 (-) True G141362
TU162485 lncRNA downstream 3293 39765600 ~ 39766347 (-) False G141362
TU162500 lncRNA upstream 1277 39771312 ~ 39771604 (-) True G141371
TU162515 lncRNA upstream 13995 39784030 ~ 39784248 (-) True G141386
TU162518 lncRNA upstream 15869 39785904 ~ 39786379 (-) True G141389
TU162521 lncRNA upstream 18005 39788040 ~ 39788730 (-) True G141392
TU162995 lncRNA upstream 79359 39849394 ~ 39849831 (-) True G141833
XM_021562336.2 mRNA downstream 214207 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 268152 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 272079 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 304034 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 304062 39449495 ~ 39465578 (-) False si:ch211-154o6.3
LOC110489623 mRNA upstream 44088 39814123 ~ 39821845 (-) True LOC110489623
XM_036948238.1 mRNA upstream 233735 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 455038 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 455038 40225073 ~ 40298251 (-) False LOC110489653
XM_036948273.1 mRNA upstream 455038 40225073 ~ 40298260 (-) False LOC110489653
TU162491 other downstream 4167 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 4217 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 4470 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 4470 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 705222 39063862 ~ 39064418 (-) True G140879
TU163223 other upstream 454587 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other upstream 454587 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other upstream 454587 40224622 ~ 40241404 (-) False LOC110489653
TU164135 other upstream 1093179 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1944511 41714546 ~ 41730422 (-) True LOC110489860

Expression Profile