RNA id: TU162493


Basic Information

Item Value
RNA id TU162493
length 222
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G141364
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39766844 ~ 39767065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAAAGTGTGAAAGGAGACAGCTAGGATTGCAGGTTTTAGCTGAGGCAGGGTCCTGTGCTATAGTCCTGTGtagcagagagacatacagtatgccATGTGAAATTACAGGCTCACCTTCCAACGGTGGTTATGAGGGGGATTTCTCTGTTGCTGTTCGTctctcacctcactcactcaaacCAGCTGTAATCCACTCCTCTCAGCcagcccacatctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162486 lncRNA downstream 381 39766021 ~ 39766463 (-) True G141362
TU162481 lncRNA downstream 497 39765556 ~ 39766347 (-) False G141362
TU162485 lncRNA downstream 497 39765600 ~ 39766347 (-) False G141362
TU162483 lncRNA downstream 497 39765770 ~ 39766347 (-) False G141362
TU162482 lncRNA downstream 497 39765958 ~ 39766347 (-) False G141362
TU162498 lncRNA upstream 2575 39769640 ~ 39770035 (-) True G141369
TU162500 lncRNA upstream 4247 39771312 ~ 39771604 (-) True G141371
TU162515 lncRNA upstream 16965 39784030 ~ 39784248 (-) True G141386
TU162518 lncRNA upstream 18839 39785904 ~ 39786379 (-) True G141389
TU162521 lncRNA upstream 20975 39788040 ~ 39788730 (-) True G141392
XM_021562336.2 mRNA downstream 211411 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 265356 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 269283 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 301238 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 301266 39449495 ~ 39465578 (-) False si:ch211-154o6.3
LOC110489623 mRNA upstream 47058 39814123 ~ 39821845 (-) True LOC110489623
XM_036948238.1 mRNA upstream 236705 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 458008 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 458008 40225073 ~ 40298251 (-) False LOC110489653
XM_036948273.1 mRNA upstream 458008 40225073 ~ 40298260 (-) False LOC110489653
TU162491 other downstream 1371 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 1421 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 1674 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 1674 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 702426 39063862 ~ 39064418 (-) True G140879
TU163223 other upstream 457557 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other upstream 457557 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other upstream 457557 40224622 ~ 40241404 (-) False LOC110489653
TU164135 other upstream 1096149 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1947481 41714546 ~ 41730422 (-) True LOC110489860

Expression Profile