G141362


Basic Information

Item Value
gene id G141362
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39765556 ~ 39766463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU162481
CAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACATGACCTATTAATGTACCTTTTTaaatgagcaaaaaaaaaaagaattacaTTTTTAATTGCAAATTAATTCACtacttaaaggaaaactccacccaaaaaacgatattttggtatttgttttattagtccattgttgatatagtacagaaatgttttgcatgtccgCAATCAAGTCTTCAAGagatgtaactttcaaaatacagaagtACAGCAGGTATGATGCATTTTACACCACATGATGATGCATTTTACACCACATGATGATGCATTTTACACCACATGATGCTGTATTTTACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTTACACCACATGATGCTGCATTTTACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTTGCATCATGACGCAAAAT
>TU162485
CAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACATGACCTATTAATGTACCTTTTTaaatgagcaaaaaaaaaaagaattacaTTTTTAATTGCAAATTAATTCACtacttaaaggaaaactccacccaaaaaacgatattttggtatttgttttattagtccattgttgatatagtacagaaatgttttgcatgtccgCAATCAAGTCTTCAAGagatgtaactttcaaaatacagaagtACAGCAGGTATGATGCATTTTACACCACATGATGATGCATTTTACACCACATGATGATGCATTTTACACCACATGATGCTGTATTTTACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTGACACCACATGATGCTGCATTTTACACCACATGATGCTGCATTTTACACCACATGATGCTGCATTTGACACCACATGATGCTGC
>TU162483
CAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACATGACCTATTAATGTACCTTTTTaaatgagcaaaaaaaaaaagaattacaTTTTTAATTGCAAATTAATTCACtacttaaaggaaaactccacccaaaaaacgatattttggtatttgttttattagtccattgttgatatagtacagaaatgttttgcatgtccgCAATCAAGTCTTCAAGagatgtaactttcaaaatacagaagtACAGCAGGTATGATGCATTTTACACCACATGATGATGCATTTTA
>TU162482
CAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACATGACCTATTAATGTACCTTTTTaaatgagcaaaaaaaaaaagaattacaTTTTTAATTGCAAA
>TU162484
CAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACA
>TU162486
CATGTAAGTTCATGTGGTTTATGTGAATAGGAGATTGTATCACTGTCAAAGAAAACTTGAGGTGAACTAACACCTCTCCAAATGAAGATTGAGCTTTATTGTCATTACTCAAATGCCAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162481 False 792 lncRNA 0.37 1 39765556 39766347
TU162485 False 748 lncRNA 0.35 1 39765600 39766347
TU162483 False 578 lncRNA 0.39 1 39765770 39766347
TU162482 False 390 lncRNA 0.48 1 39765958 39766347
TU162484 False 327 lncRNA 0.36 1 39766021 39766347
TU162486 True 443 lncRNA 0.36 1 39766021 39766463

Neighbor

gene id symbol gene type direction distance location
nr0b2a LOC106605079 coding downstream 210123 39553803 ~ 39555433 (-)
LOC118940039 NA coding downstream 264068 39499737 ~ 39501488 (-)
LOC110501545 NA coding downstream 267995 39487555 ~ 39497561 (-)
si:ch211-154o6.3 LOC106605084 coding downstream 299950 39449495 ~ 39465606 (-)
LOC110489516 LOC106605085 coding downstream 316222 39442306 ~ 39449334 (-)
LOC110489623 zadh2 coding upstream 47660 39814123 ~ 39821845 (-)
LOC110489634 LOC106605073 coding upstream 237307 40003770 ~ 40078999 (-)
LOC110489653 LOC106605072 coding upstream 458610 40224622 ~ 40298333 (-)
LOC110489712 LOC106605066 coding upstream 1087752 40854215 ~ 40861194 (-)
LOC110489774 LOC106583729 coding upstream 1101426 40867889 ~ 40907134 (-)
G141363 LOC106605077 non-coding downstream 83 39763933 ~ 39765473 (-)
G141360 NA non-coding downstream 3025 39762270 ~ 39762531 (-)
G141358 NA non-coding downstream 4294 39761038 ~ 39761262 (-)
G141352 NA non-coding downstream 22938 39742388 ~ 39742618 (-)
G141338 NA non-coding downstream 46301 39718997 ~ 39719255 (-)
G141364 NA non-coding upstream 381 39766844 ~ 39767065 (-)
G141369 NA non-coding upstream 3177 39769640 ~ 39770035 (-)
G141371 NA non-coding upstream 4849 39771312 ~ 39771604 (-)
G141386 NA non-coding upstream 17567 39784030 ~ 39784248 (-)
G141389 NA non-coding upstream 19441 39785904 ~ 39786379 (-)
G140879 NA other downstream 701138 39063862 ~ 39064418 (-)
G140479 NA other downstream 937361 38827909 ~ 38828195 (-)
LOC110489105 LOC106605178 other downstream 1716890 38046700 ~ 38048666 (-)
G139231 NA other downstream 2012598 37747441 ~ 37752958 (-)
G142918 NA other upstream 1096751 40863214 ~ 40863721 (-)
LOC110489860 LOC106605053 other upstream 1948083 41714269 ~ 41730507 (-)
G145010 NA other upstream 2940355 42706818 ~ 42707279 (-)
G145767 NA other upstream 3504254 43270717 ~ 43272516 (-)

Expression


Co-expression Network