RNA id: TU162486


Basic Information

Item Value
RNA id TU162486
length 443
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G141362
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39765556 ~ 39766463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTAAGTTCATGTGGTTTATGTGAATAGGAGATTGTATCACTGTCAAAGAAAACTTGAGGTGAACTAACACCTCTCCAAATGAAGATTGAGCTTTATTGTCATTACTCAAATGCCAGTATCATTACAATTTCATTTACAGAAACATATATTTACATTGACTGAGAGCAGTAAAgccaatgaaaaaaaaaatacttgtcaACTTGAATTGAATTATGATTATCAGAAACACATTTTGAGAACATCCTGAAAAACAGATGGACTGCCCATGGATTCAGACCAATCAGCATCCTGACCATATTGAGCAATTGCTGAAAGAAAAGCCAATCATTGGACTGCCCCTGGATTTAGACCAATCAGCCTCCTGGATATTTTCGATGTCCAAAATACTATTGGTCCTAGATTCAGCAAGGTAAGTTGTAATAGCCGGTCTTATCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162489 lncRNA downstream 548 39763933 ~ 39765473 (-) False G141363
TU162479 lncRNA downstream 3490 39762270 ~ 39762531 (-) True G141360
TU162477 lncRNA downstream 4759 39761038 ~ 39761262 (-) True G141358
TU162471 lncRNA downstream 23403 39742388 ~ 39742618 (-) True G141352
TU162457 lncRNA downstream 46766 39718997 ~ 39719255 (-) True G141338
TU162493 lncRNA upstream 381 39766844 ~ 39767065 (-) True G141364
TU162498 lncRNA upstream 3177 39769640 ~ 39770035 (-) True G141369
TU162500 lncRNA upstream 4849 39771312 ~ 39771604 (-) True G141371
TU162515 lncRNA upstream 17567 39784030 ~ 39784248 (-) True G141386
TU162518 lncRNA upstream 19441 39785904 ~ 39786379 (-) True G141389
XM_021562336.2 mRNA downstream 210588 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 264533 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 268460 39487555 ~ 39497561 (-) True LOC110501545
XM_021562210.2 mRNA downstream 300415 39449495 ~ 39465606 (-) True si:ch211-154o6.3
XM_021562215.2 mRNA downstream 300443 39449495 ~ 39465578 (-) False si:ch211-154o6.3
LOC110489623 mRNA upstream 47660 39814123 ~ 39821845 (-) True LOC110489623
XM_036948238.1 mRNA upstream 237307 40003770 ~ 40078999 (-) True LOC110489634
XM_036948285.1 mRNA upstream 458610 40225073 ~ 40298251 (-) False LOC110489653
XM_036948297.1 mRNA upstream 458610 40225073 ~ 40298251 (-) False LOC110489653
XM_036948273.1 mRNA upstream 458610 40225073 ~ 40298260 (-) False LOC110489653
TU162491 other downstream 548 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 598 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 851 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 851 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 701603 39063862 ~ 39064418 (-) True G140879
TU163223 other upstream 458159 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other upstream 458159 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other upstream 458159 40224622 ~ 40241404 (-) False LOC110489653
TU164135 other upstream 1096751 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1948083 41714546 ~ 41730422 (-) True LOC110489860

Expression Profile