RNA id: XM_036948285.1


Basic Information

Item Value
RNA id XM_036948285.1
length 2648
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110489653
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40224622 ~ 40298333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGAAGAAGGTGAAAACAACGCCGAACCGTGGAAGATAAAACGTTATGGTCCACGAAAAGAGAAACGTCACATCAAAATCACAGCCTCTTATGGTGGATGCATTTGATTCGATCTAAACGGAGAAGGTCTCTGTTGACAACATGGGACAGCATCTAGGTAAACACGAGCCACAGCCGCAGAGCAAGCCTTTGTCCGCAGAAGCAGAACAGACCATAGAACCAGCACCCATTGGTGAGACCATGGCAGAAGCCGAATCACAAGACGAGGTCTTTGGCCTGGATGAGGCAGATGTGAACCCGAACAATGGCTGCCCCTCTGAGAAGGCGGCGGCGGTGACTGACTCCACGGGCACTGAGGGGCCCAGCAGCTCCTGGAACGAGACCAGCACAGCTGATGCTGACGATAGTGCCGTGCCACGCCCCCACCTGGTCCGCCTCTTCTCCCGAGATGCCCCGGGCCGCGAGGACAACACCTTCAAAGACCGCCCTTCTGAATCAGATGAGCTACAGACCATCCAAGAGCACAGCGGAGCGGGATCAGAGTGCGGTTCAGAGGATCAGGATCTAGACTAAGTTTGTTTCTttgctctcctttctctctcttaatACCCCCTTCGCTCTTACCTGAGAGACAGAACCCCACTTACAGAGATACTAGCTGCACTACCCAACCCAAACCACTGACATGGCAACTGCAAGCTCCTCTGGACTGTCTAGCCTGGGAAGGAAAAAGAAGGCCCCTGGCCTTATGGATCAAATTGGGAACTTCTTTGGAGGGGACAAGAAGAGGAAGAGCAagGGTTCCTTCCGtggcctgtcctcctctcctgccaGACCTGCCAAGGCAGCCCCTAAGGGAGGGGAGAACGCTGTTGTACGCCTCTTCAGAACGATCGTGTCCCCTGCCCCTCCTAAGTCTAGGTGGACGGCAATGACTGCGAAACTAGGCCTGGGGTCTCAGAAGTCAACAGGATCCGCTAAGGCAAAGAAGGCCGGTGCAGGAGACAGCGGAACCCTGTCCAAGATCTTCAAAATGTGATGATACCCAGCACTCAGGCACAAGCCGGACTGGGTCTCTACCCAAAAAATGAGGTCCCCTTTCAAGAGCACAAAGGCAGATGTCAAGAAAAGGGACGCAAGTGGGGGGAAACAAAGAAGATACAAGAACAGATCTTTGTCGACTCACACACCTCTTCTCCCTGCTTTTCTAACACTTTCATTTTATAACTCAAATGCCTCCCCCACCGCACCCGGCTGGTAGATATAGCGACACAATCTGTGCCTCCCCCCCACCCCGCACCCTGCTCCACCCTCCTGTGCAACCATCTTGGATGTGAACTGTTGCTGAAGTCATCCGGACCCCCTCTTACAGCCTAAAGGACCCCTGTCATAGCTTTACAGTATCTGTGTCTTCAtttatatttctctgtctgtctgtatagtcGTTTAACAAGGCTGGCTAACTGGACCAGACCTGGCTGAAGTAGCTTAGGTCCAATTGACCTGGCCCTGACCGCTTGTGGTTGTGAAAGTATGAccaggtctggttctggttcagAAACGAGTGATTATCTGTCTTGTCATGCTCGTCTttgcccacccccacccccacccccaaaccCCACACACTCTCCCATTTCTGTACACCCTGACATGAATTCATAGCTAAGCATCGTCTTACTCAGTTGGTCATGTGTTTGTATGTCTCCCCTCCTGTATCATCAGTGTAAGTGTCCTGTCTTAAGTGTTGCTGTCTTTCCATGTTTTTACATTAGGGCTTGCTGTGATCTTCGGTGGTAAAATGACATCGAGCTACTGAAAGCTGTTAACCTACTAAAAGTCTCTTGTCTGTAGTATCCACTGAATTGTAGACGTCAATCATTTCTAATGTTGTTTTCATTTGATTTCCAGTACATGTAGATTGATTATGACACTAATGGGAGTTTCCCCATCCAGACACAACTGGGATTCGTCTAAAGTGCACTGTTTTGACCGTTGAAAAGCCAGACACTGACTGCTCTGAAACCAAGCTCACGCTGGACCTGCTACAAGCATGGCATTTCCAACGGGGGGACAGATTCAGACCCTTCCCCCATTAGTGTAGACTAGATTCTGTAGTCTTCAGTATCTCTTGCTTTATATATCTATCAAAGCACTGCACACAATATGAATACAAAAACAGCTAGCTAAGCAATGCCATTTCTGACTGCCAAAAACAATGTGGTGTGTTTACTCTGTGTGGATATTAAAAGACCAACACTGTCATAAAGGTGCTCGTTATTTAACCGTGTAAAAGCATAAAcgttattaaaaaaaaaagatggatATAGAGGACGTGGAGTTTGTCGACCAAGGCACGAGCGACGAGTTGCATAAACTGCTTATTACTgtccaataccccccccccccacaccagtGTCTTTCCTCAATTTGTTTAAAAACAAACGTGTCATCTGTAGCATTACTCTGCCTGCCCCCGTCGCCCCTCCCCCATGTCTTAAAGTGTGCGCGCATTTTTGTATGGGTCCTGTGAATGAATGTAAATTAAACTCTTGAGACCCTCATTGTTGTatctgtaataaaaaaaaatgatgtaCGACCAGCCACTTAcctagaaaaaataaataaagcattTAAAAATCATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163244 lncRNA downstream 8454 40216404 ~ 40216619 (-) True G142070
TU163243 lncRNA downstream 8751 40216066 ~ 40216322 (-) True G142069
TU163091 lncRNA downstream 211459 40008380 ~ 40013614 (-) True G141925
TU163089 lncRNA downstream 211765 40008380 ~ 40013308 (-) False G141925
TU163076 lncRNA downstream 234319 39990449 ~ 39990754 (-) True G141913
TU163513 lncRNA upstream 225795 40524046 ~ 40524255 (-) True G142334
TU163643 lncRNA upstream 231456 40529707 ~ 40633685 (-) True G142462
TU163705 lncRNA upstream 330658 40628909 ~ 40709425 (-) True G142523
TU163764 lncRNA upstream 403812 40702063 ~ 40715305 (-) True G142568
TU163785 lncRNA upstream 424893 40723144 ~ 40723382 (-) True G142589
XM_036948238.1 mRNA downstream 146074 40003770 ~ 40078999 (-) True LOC110489634
LOC110489623 mRNA downstream 403228 39814123 ~ 39821845 (-) True LOC110489623
XM_021562336.2 mRNA downstream 669640 39553803 ~ 39555433 (-) True nr0b2a
XM_036948182.1 mRNA downstream 723585 39499737 ~ 39501488 (-) True LOC118940039
LOC110501545 mRNA downstream 727512 39487555 ~ 39497561 (-) True LOC110501545
XM_021562506.2 mRNA upstream 555964 40854215 ~ 40859593 (-) False LOC110489712
XM_036948344.1 mRNA upstream 555964 40854215 ~ 40859666 (-) False LOC110489712
XM_021562497.2 mRNA upstream 555964 40854215 ~ 40861194 (-) True LOC110489712
XM_036948417.1 mRNA upstream 569638 40867889 ~ 40907134 (-) False LOC110489774
XM_036948420.1 mRNA upstream 569638 40867889 ~ 40907134 (-) False LOC110489774
TU162491 other downstream 459600 39764507 ~ 39765473 (-) True G141363
TU162488 other downstream 459650 39763933 ~ 39765423 (-) False G141363
TU162487 other downstream 459903 39763933 ~ 39765170 (-) False G141363
TU162490 other downstream 459903 39764507 ~ 39765170 (-) False G141363
TU161916 other downstream 1160655 39063862 ~ 39064418 (-) True G140879
TU164135 other upstream 564963 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1416295 41714546 ~ 41730422 (-) True LOC110489860
TU166468 other upstream 2408567 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 2972466 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 3074589 43372840 ~ 43392129 (-) True LOC110490183

Expression Profile