RNA id: TU163705


Basic Information

Item Value
RNA id TU163705
length 814
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G142523
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40628909 ~ 40709425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttttcttccagaatggtcctgtatttggctccatccatcttcccatacattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttaatctgaccagagcaccttcttccacatgtttggtgtgtctggcaaactttaaacgacactttgtatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactaattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccttttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgacactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacatctggagagagtttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163513 lncRNA downstream 104654 40524046 ~ 40524255 (-) True G142334
TU163228 lncRNA downstream 330670 40282689 ~ 40298239 (-) True LOC110489653
TU163244 lncRNA downstream 412290 40216404 ~ 40216619 (-) True G142070
TU163243 lncRNA downstream 412587 40216066 ~ 40216322 (-) True G142069
TU163091 lncRNA downstream 615295 40008380 ~ 40013614 (-) True G141925
TU163785 lncRNA upstream 13719 40723144 ~ 40723382 (-) True G142589
TU163803 lncRNA upstream 27847 40737272 ~ 40737546 (-) True G142607
TU163831 lncRNA upstream 60185 40769610 ~ 40769890 (-) True G142635
TU163838 lncRNA upstream 65352 40774777 ~ 40775015 (-) True G142642
TU164077 lncRNA upstream 68092 40777517 ~ 40780638 (-) True G142865
XR_005036687.1 mRNA downstream 330576 40225527 ~ 40298333 (-) False LOC110489653
XM_021562506.2 mRNA upstream 144790 40854215 ~ 40859593 (-) False LOC110489712
XM_036948344.1 mRNA upstream 144790 40854215 ~ 40859666 (-) False LOC110489712
XM_021562497.2 mRNA upstream 144790 40854215 ~ 40861194 (-) True LOC110489712
XM_036948417.1 mRNA upstream 158464 40867889 ~ 40907134 (-) False LOC110489774
XM_036948420.1 mRNA upstream 158464 40867889 ~ 40907134 (-) False LOC110489774
TU163223 other downstream 387505 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other downstream 387505 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other downstream 387505 40224622 ~ 40241404 (-) False LOC110489653
TU162491 other downstream 863436 39764507 ~ 39765473 (-) True G141363
TU162490 other downstream 863739 39764507 ~ 39765170 (-) False G141363
TU164135 other upstream 153789 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1005121 41714546 ~ 41730422 (-) True LOC110489860
TU166468 other upstream 1997393 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 2561292 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 2663415 43372840 ~ 43392129 (-) True LOC110490183

Expression Profile