RNA id: TU163513


Basic Information

Item Value
RNA id TU163513
length 210
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G142334
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 40524046 ~ 40524255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAATGACAATCTGTTGAATTCTTGGAGTCAAAAGTCCTCAACAAAATCCCCTTTGCATATAAAGAAAGGGGGGGGATATGGAGCTCAATGGCCaaagctccctctctccctcccattcgtCTATGCCGCGGTGGTTCCAACCCTGGGAGCCTGTGTTATTGTTTTCCATCTGTGAAATAAAGTAACAGTTACTTAATGTACCAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU163228 lncRNA downstream 225807 40282689 ~ 40298239 (-) True LOC110489653
TU163244 lncRNA downstream 307427 40216404 ~ 40216619 (-) True G142070
TU163243 lncRNA downstream 307724 40216066 ~ 40216322 (-) True G142069
TU163091 lncRNA downstream 510432 40008380 ~ 40013614 (-) True G141925
TU163089 lncRNA downstream 510738 40008380 ~ 40013308 (-) False G141925
TU163643 lncRNA upstream 5452 40529707 ~ 40633685 (-) True G142462
TU163705 lncRNA upstream 104654 40628909 ~ 40709425 (-) True G142523
TU163764 lncRNA upstream 177808 40702063 ~ 40715305 (-) True G142568
TU163785 lncRNA upstream 198889 40723144 ~ 40723382 (-) True G142589
TU163803 lncRNA upstream 213017 40737272 ~ 40737546 (-) True G142607
XR_005036687.1 mRNA downstream 225713 40225527 ~ 40298333 (-) False LOC110489653
XR_005036688.1 mRNA downstream 225713 40225527 ~ 40298333 (-) False LOC110489653
XR_005036685.1 mRNA downstream 225713 40225649 ~ 40298333 (-) False LOC110489653
XR_005036686.1 mRNA downstream 225713 40225649 ~ 40298333 (-) False LOC110489653
XR_005036689.1 mRNA downstream 225758 40225649 ~ 40298288 (-) False LOC110489653
XM_021562506.2 mRNA upstream 329960 40854215 ~ 40859593 (-) False LOC110489712
XM_036948344.1 mRNA upstream 329960 40854215 ~ 40859666 (-) False LOC110489712
XM_021562497.2 mRNA upstream 329960 40854215 ~ 40861194 (-) True LOC110489712
XM_036948417.1 mRNA upstream 343634 40867889 ~ 40907134 (-) False LOC110489774
XM_036948420.1 mRNA upstream 343634 40867889 ~ 40907134 (-) False LOC110489774
TU163223 other downstream 282642 40224622 ~ 40241404 (-) False LOC110489653
TU163224 other downstream 282642 40224622 ~ 40241404 (-) False LOC110489653
TU163225 other downstream 282642 40224622 ~ 40241404 (-) False LOC110489653
TU162491 other downstream 758573 39764507 ~ 39765473 (-) True G141363
TU162490 other downstream 758876 39764507 ~ 39765170 (-) False G141363
TU164135 other upstream 338959 40863214 ~ 40863721 (-) True G142918
TU165059 other upstream 1190291 41714546 ~ 41730422 (-) True LOC110489860
TU166468 other upstream 2182563 42706818 ~ 42707279 (-) True G145010
TU167289 other upstream 2746462 43270717 ~ 43272516 (-) True G145767
TU167341 other upstream 2848585 43372840 ~ 43392129 (-) True LOC110490183

Expression Profile