RNA id: XM_021561889.2


Basic Information

Item Value
RNA id XM_021561889.2
length 2505
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110489249
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38952824 ~ 38963780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATTGTTAGATCAGTGGCACCTCTCTTGGAACCACAGTTGAGCCTTGACAGCACAACATCGAGGCAGCACTGCAGTGATGGCAGGCACTGAAACAGTTATGTCCCTGCAAGAATTAATTGCATCCTTGGATAAAACATGTCTGCCACGGATTCTGCAGGTTTGCTCTGGGGTATACTTTCAAGGCTCTGTTTATGAGCTGTCGGGAAGCGAGGTGTGCCTGTCCACGGGGGACCTGTTGAAGGTCATCGACATCGAGCTCCTGTCTGTCAGCTGTGAGGACACCAGCAACAATGATAAGTTTGAGCTGCCCATCAACCATGCAGATCTGTTCAAGCTGGTTCCAGAGGAGATGCCATACAGCACAGTGGAGGAGATGGTGAGTCTGAGGCCTGTAGGCCTGGACACCTGCTTTCCCTTCACCTTCACCAGCCGATGTGAGCTGACCTTACAGAATTTCACGCTCGGTGCCGGGATGGCCGTGACCATGCTACACATCGAGCAGCAGGACGGGGGTGAGGAGAGCTGCGTCCGCTGTCAACTCAGAGGCCAGCAGGGGGCTTCGGCTGACGTGCTAATCCCCTACTCCTGCCGTGGGGAGTTCTATGAGTGTGAGAGTGACCAGACCTACACCCTCCAGGAGATCATGTCCTCGCCCCACCTCTGCAGCCGGCACTTTTGCTTCAGCAAGAAGACCAAGCACGGGGCATCGCTATTCTTCAGCCCCATATACCAGGTCCAGGCCATCATGCACTTGAGGAAGAACATAGTCAAGTTCCCCTCCAGCTTGGAGGTGGATGTGGTCGACGTGACGACGGAATCCCAAGACTTGACATTTGTGACCCCGCTCACTCTGCTCGAGGTCTTTGCACAGCCAGACGAGGCCTTCCCCACAATGGCTGAAATACTGGAGCACCATGAGGGCCAGCCTCTGTTCCGTTGTACCTGGCTGGCTGAGCTACACAAGGGCCATCCTCTAGTCCTTCACAAGCGTGGTTCCTCAGCCATGGTTCTGGCTTCGGGTCTCAAGGGGCGCAAGGCCCGCCAGTACTTCCTAATGTCGCAGAGCTACGGGGGACGGCTGCGACGGAGGCCGCGGGAGTTCGAGTCGGTGTACGAGCTGTACGCCGCCTCGACCCAAGCGCCGTTACTCACGGTCAGGGTGACGCGGCACagtgaggagctggaggaggaggggcTTCTGGCACTCAGTGTGGGCGAGCAGCTGGAGGTGCTGCGCTGCGAGAAGGTGAAGCTGCCCGGAGGAGGAACCAGCCAGGAGGAGAAGAATAACCAGACCGTGGAGGTCCTTGTATGTAGACGTCTTCAAGAAGTGGACgatgacgaggaggaggatgaagaggagaaggaggagagtgaGGTGGTCCATTTGCCCATGTACATGCAGAGCCACTTTGTGGAGAAGCTCACGGACAATAAGAAGTACAGCCTGAAGGACTTGTGCAAGGCCTTTGCTCTGCCACTGGACGTTAAGGTGGTGAGCGGTGACGCAGAGCTGGAGAAAGATCCTCTGGTGGGGTTCTCATCCCTGAGGCTGCAGGAGGCTACTATACAGCCCATGGTCCAGGCCAGCCTTCCAGGAAAGCCAGAGAGGTGCTTTGAGATACCCACAGACTGGCTTAACATGTCTTTGTCTTTTACTAACGACCCCTTGCCTTTGACCCAAGAATATCACCTGGAGACAGTTACAGAGGTGACAGACTCATTCTATTACGAATTTCGAAAGCTCACCGCATCAGATGAGCCCCCACCACCACGTCCACCAAAGCCGAAGCCATCATCAAGATCAAATCCACCGTCAGCCTCAAAACCATTGTCAGGCTCAAAGCCATTGTCAGGCTCAAAGTCTTTCAAGGCAACCCCTTCACCCTCACACCCAGATGCCCCCTGTCTTCCACCCAAAAGCGGCACCCTTTCCCTGTTGAGTGATCTAAGTCTTGATAGCAAAAAGGCTCAAAGGCCCCCTGCTCCTCTGCCTCCGGATTTCAAGGATGATGCTCTTCCGCTGAATCCAAGAAAACCTATGACCGATGTCAAGTCAGGCAAGGCTCAGCCAAACACTTACATCAAGTCTAAAAGTCACAAGCCCAACAATAAAGCAGCGGCGAAATATGAAGTTCAAGCAGATGAGGACAGTGACCATGATTATGAGCAAGTGGACGACAAGTTGAGAAGAGCACAGgaccattttttattttactgaacCAGCGAGGTTGAGGAATAACTATTAAAAGGCTAACTAAAGTCTCATTGCATAAAATAGACTAGACTATATAGGGTGCAAGACAATGTCAGAACTACGCACTGATAGCCAGCCACTGTAACTGTGAATACTTTGAGATGGGACTGTGCAAAACAGGATACATGTCTTATTGTACACATATTTTGTTACTTGGTTTTCATTTTCTACATTGCTACAGTCACAAGTCACACTTGCCAACCGATTATCCCAAATGCTTATCATAATAAAAGCctattggtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161563 lncRNA downstream 18596 38933850 ~ 38934228 (-) True G140560
TU161512 lncRNA downstream 34248 38875460 ~ 38918576 (-) True G140511
TU161499 lncRNA downstream 95804 38856703 ~ 38857020 (-) True G140498
TU161497 lncRNA downstream 96716 38855888 ~ 38856108 (-) True G140496
TU161451 lncRNA downstream 105090 38847225 ~ 38847734 (-) True G140456
TU161507 lncRNA upstream 6849 38970629 ~ 38989073 (-) True G140506
TU161883 lncRNA upstream 37586 39001366 ~ 39002616 (-) True G140846
TU161894 lncRNA upstream 55482 39019262 ~ 39019499 (-) True G140857
TU161899 lncRNA upstream 63787 39027567 ~ 39027804 (-) True G140862
TU161908 lncRNA upstream 77746 39041526 ~ 39041636 (-) True G140871
XM_021561815.2 mRNA downstream 60778 38858506 ~ 38892046 (-) True LOC110489192
XR_002468535.2 mRNA downstream 98566 38852233 ~ 38854258 (-) True LOC110489186
XM_021561745.2 mRNA downstream 201595 38740727 ~ 38751229 (-) False LOC110489143
XM_021561718.2 mRNA downstream 458483 38379192 ~ 38494341 (-) True LOC110489131
XM_021561705.2 mRNA downstream 865426 38086165 ~ 38087398 (-) True LOC110489123
XM_021561924.2 mRNA upstream 11825 38975605 ~ 38983972 (-) True LOC110489261
XM_036947875.1 mRNA upstream 233886 39197666 ~ 39209101 (-) False LOC110489287
XM_036947873.1 mRNA upstream 233886 39197666 ~ 39209108 (-) False LOC110489287
XM_036947874.1 mRNA upstream 233886 39197666 ~ 39209108 (-) False LOC110489287
XM_036947872.1 mRNA upstream 233886 39197666 ~ 39209110 (-) False LOC110489287
TU161480 other downstream 124629 38827909 ~ 38828195 (-) True G140479
TU160233 other downstream 904158 38046702 ~ 38048666 (-) False LOC110489105
TU160230 other downstream 904216 38046702 ~ 38048608 (-) False LOC110489105
TU161916 other upstream 100082 39063862 ~ 39064418 (-) True G140879
TU162487 other upstream 800153 39763933 ~ 39765170 (-) False G141363
TU162488 other upstream 800153 39763933 ~ 39765423 (-) False G141363
TU162490 other upstream 800727 39764507 ~ 39765170 (-) False G141363
TU162491 other upstream 800727 39764507 ~ 39765473 (-) True G141363

Expression Profile