G143793 (LOC106583515)


Basic Information

Item Value
gene id G143793
gene name LOC106583515
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 41711902 ~ 41712782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU165061
GTGATTAGATTTACTTTAATCCTCACACAAACATAGATGTATCGTGACATGTGAAAACATAGTCTGTGTGTGTAAACAGTCTCTGCTGATCTGTGGCATGACCTTTCTTCAAAGATTGTCGGACTCAGAACCACCATCTTGCACCACCACCATCTTGAAGTTCCACTCTGGCAAGTCTAATGCACTTCCATTGTAAACTGCCCAGGGGACATTGAACACAGCCTGAAAAAGCCATTGCATTTTTTGTTTgataaacactgaacaaaaatgtacatGCAACACTTTCAAAGattctactgagttacagttcatattaggaaatcagtcaattgaataaCTGAATTAGTCcctattctatggatttcacatgactgggaatacagaaatgcatctgttagtcacagatacctGTGGGGTGTAGGgtcatggatcagaaaaccagtcagtatctgatgtgaccaccatttgccccaTGCAGTACGACACATCTACTTcgaatagagttgatcaggctgttgattatggcctgtggaatgttgtcccactcctcttcaatggctgtgtgaagttgctggatattggcaggaactggaacacactgtcatacatgtcgatccagagcattccaaacatgctcagcgggtgacatgtctggtgagtatgcaggccatgggagaactgggacattttcagcttccaggaaatgtgtacagatccttgtgacatggggctgtgatTTATCTTGCTGAAACATGTTATGGCGGCAGATGATTGGCATCACAATGGGCTTCAGgttctcatcacggtatctctgtgaattcgataaaatgcatttgtgtttgtTGCCAGCAGCTTATGCCTGgccgtaccataaccccacc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165061 True 881 lncRNA 0.43 1 41711902 41712782

Neighbor

gene id symbol gene type direction distance location
LOC110489843 LOC106605054 coding downstream 24369 41679632 ~ 41687533 (-)
LOC110489824 LOC106605057 coding downstream 272086 41436627 ~ 41439816 (-)
LOC110489806 if36 coding downstream 426140 41239892 ~ 41285762 (-)
LOC110489798 LOC106583742 coding downstream 474383 41157008 ~ 41237519 (-)
LOC110489723 NA coding downstream 599922 40928216 ~ 41111980 (-)
LOC110489860 LOC106605053 coding upstream 1487 41714269 ~ 41730507 (-)
LOC110489886 LOC106605049 coding upstream 250940 41963722 ~ 41969950 (-)
LOC110489894 LOC106605044 coding upstream 282155 41994937 ~ 42030841 (-)
LOC110501561 LOC106605047 coding upstream 372629 42085411 ~ 42100295 (-)
LOC110489954 LOC106605048 coding upstream 504865 42217647 ~ 42223758 (-)
G143786 NA non-coding downstream 17661 41694038 ~ 41694241 (-)
G143785 NA non-coding downstream 19132 41692552 ~ 41692770 (-)
G143735 NA non-coding downstream 44498 41667115 ~ 41667404 (-)
G143551 NA non-coding downstream 311248 41400328 ~ 41400654 (-)
G143803 NA non-coding upstream 22469 41735251 ~ 41735635 (-)
G143804 NA non-coding upstream 23478 41736260 ~ 41736468 (-)
G143805 NA non-coding upstream 27664 41740446 ~ 41740777 (-)
G143806 NA non-coding upstream 28067 41740849 ~ 41741079 (-)
G144195 NA non-coding upstream 56848 41769630 ~ 41769971 (-)
G142918 NA other downstream 848181 40863214 ~ 40863721 (-)
LOC110489653 LOC106605072 other downstream 1470498 40224622 ~ 40298333 (-)
G141363 LOC106605077 other downstream 1946429 39763933 ~ 39765473 (-)
G140879 NA other downstream 2647484 39063862 ~ 39064418 (-)
G140479 NA other downstream 2883707 38827909 ~ 38828195 (-)
G145010 NA other upstream 994036 42706818 ~ 42707279 (-)
G145767 NA other upstream 1557935 43270717 ~ 43272516 (-)
LOC110490183 LOC106605015 other upstream 1660058 43372725 ~ 43392160 (-)
LOC110490298 LOC106605170 other upstream 2063281 43776063 ~ 43783884 (-)

Expression


Co-expression Network