XLOC_021155 (cfhl2)


Basic Information

Item Value
gene id XLOC_021155
gene name cfhl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 23734001 ~ 23748284 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041539
AAAAAAGCTACTTGTGAATTGAGCTCAAAATGAATGTTCCTGCAAAACTCCTGGGCTTCGTTGTTTGGTTGTTGTGCTTGAATTGTGGCCAGTGTGAAGATTGTCTTGGAACTGACATTAACTATGAAAATGTAGAACCAGTTTTAGAATGGTCATATCCTGATGGAAAAACAGTAAGAGTGACCTGCCAGACAGGGTATACTGGCATGTACAGATTAAGGTGTGAAGACGGAAAGTGGAGTGAAAACATTGCGCGACCATGTGCAAAGAAAAGGTGCAGTCATCCAGGGGAAGCAGCAAACGCTGATTTTAAACTTTTAGATGGGACGGAGTATGTATTTGGAACAACGGTGGTGTATACTTGCAAGAAAGGGTATAAAATGAAAAGCAGAATCAATCACCGTACCTGCAGATCTCAAGGATGGGACAATGCCATCCCTGTGTGTGAAGCTGTAACTTGTGAGCTTACTTCAAACTATGAGGTGAAAAGGGTCGTCCCAGAGGGAAAAACTATTTTCAGAGCTGGAGAAAGATTGACAATCACCTGCACTGAAAAAACCTGGTTTAGATCCAAAGAAACCATCAAAACATTTGCATGTCAAGATGATGGGACGTGGGACTCTAATCCTGGTTGTGAAGGAATGTGTGCAAGACCTGATATCCCAAATGCAAAAATTATAGGAGATCTAAGACAAAGTTACAGCACTAATTCAACAATACGATATAAATGTAATCCGGGATTTGAACCTGAAGAAACTGTCCAAATCACTTGTGATCACCAAGCTCAATGGACAGGTTTACAGCAGTGCACTGCAAAGCAAGAAGTGTGCCCTGATGTACATGTGAAAAATGGGTTTAGTCAACCCCTAAACAAAACAGTAATCTTTTACGCCTGCAACAAGGGTTACAAACCATTCAATGGAGAATGGTGGAGTTCAGTGACGTGTGTTAAAGGCTCTTGGTCTGATGTTCCTCTGTGCATCCGGAAGGAAGAATGTGGTGCTTTCCCCAGTGTTCAGAATGGAAAACTTAAACTTAAAGATCAAGAAACCGCTGAAATTGATTGTGATCCAGGATTCATATCAAGTACACCTTCTATAAAATGCAACAATGGTACATGGGAAACACCAACCTGTAACGAGGGTGTGAGATGTGGCATTCCTCCATATGTGGATAATTCAGTCATTATTTCTAAACCTGAAGTTGTTTATATACATGGATCAAGTGTTACATACAcatgccgaagcccgtttgtaaTGATTGGGAAAAGTACAGTTTTCTGCAGCAATGGAAAATGGGAAGAAACACCAACATGTGAAGCAAGGTGTCTCAGGCCACTTGAGAATTATATGTCACTGGCAAATGATAAAGACACATACCAGGATAAAGAAATTCTAAACTACCAATGCTTGAAGCCGTATGATAAAATTCCAGAAGGAGAGTGGATCTGTGAAAACGGAAAATGGACTGGAGACTTTGTCTGCACAAGTGACATCTGCCCACCTCCTCCTTATATTGAAAATGGAAGTCATTTTAGTAGGAATCCAGATGATAAAATGCCTACTGAGGTATACTATGAATGCCAGGCTTACTATGTGCTGAGTGAGAGAAAGCAATATTACAGGTGTGAAAACGGGAGATGGAGAACCCCTCCGAAATGTCTGAAGCCTTGTCAAATTACACAAGATATTCTTGAAGCACACAACATGAGACCCGATCAACAAACAGGCTATATAAAGCATGGTGACTATGTTGACTATTATTGCCAGCATAGATTGATTGTTAGGACAGGACACTACAAGAAAGCAACATGTTCTGATGGAAAGTTGGAAATTGAATCATGTGAATAGATGTGTTTGTGTATTATCAGATGTACAGGAATTAGCTGAGGTCATCAGATGTGCCTATGGCTAATCTACAGTCACATTTACCAACCTGATAATATTGAGGCTCATTTAATAGACCTGTTTTGTTGAGGTTTGATTTGATGACCCTGATGCAGGGTCAGTCTTTGACAGTCATTGCAGATGGTCACTCATCACTCTCAACTGTTTCAACTCTTCTCTGATTGTTGGCTATCTGATCTTCTCTGCTCTCTCGCTCTGTGCTTGATAATTGTTTAAAAGCTTGTCCCAAGCTTCATGTGCAAAGGCAAAAGCATACTCGTCATTGCCTTCTTGTGCATTGGCTAACATCAGTTCTGCCCGCAGTCTGTGTTTGAGTAATCCCATTCTGTAAAAGGCCCTGTGATCCTCTTCTGTTTCTGTTTCCTGGAGGGTTATTTTCTGTTTGGTTCAGTCCTGCAGCGCCCAGAAGAAAGCTGACTATACGAGTGCTTTATTtctctttattaataaatactatttcTGTGATTTA

Function

symbol description
cfhl2 Is expressed in several structures, including digestive system; eye; gill; heart; and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute myeloid leukemia; age related macular degeneration 1; atypical hemolytic-uremic syndrome; and multiple myeloma. Orthologous to several human genes including F13B (coagulation factor XIII B chain); CFHR1 (complement factor H related 1); and CFHR2 (complement factor H related 2).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-123 Is expressed in several structures, including digestive system; eye; gill; heart; and yolk syncytial layer. Human ortholog(s) of this gene implicated in acute myeloid leukemia; age related macular degeneration 1; atypical hemolytic-uremic syndrome; and multiple myeloma. Orthologous to several human genes including F13B (coagulation factor XIII B chain); CFHR1 (complement factor H related 1); and CFHR2 (complement factor H related 2).

Ensembl:

ensembl_id ENSDARG00000103760

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041539 True 2376 mRNA 0.41 12 23734001 23748284

Neighbor

gene id symbol gene type direction distance location
XLOC_021154 cfhl1 coding downstream 27230 23693195 ~ 23706771 (-)
XLOC_021153 cfh coding downstream 65533 23641801 ~ 23668468 (-)
XLOC_021152 cfhl4 coding downstream 108629 23598036 ~ 23625372 (-)
XLOC_021151 NA coding downstream 137040 23593057 ~ 23596961 (-)
XLOC_021150 f13b coding downstream 142508 23584797 ~ 23591493 (-)
XLOC_021156 BX005398.1 coding upstream 4302 23752586 ~ 23754415 (-)
XLOC_021157 BX005398.2 coding upstream 9671 23757955 ~ 23758641 (-)
XLOC_021158 cfhl3 coding upstream 19273 23767557 ~ 23781213 (-)
XLOC_021159 AL935303.1 coding upstream 220796 23969080 ~ 23969709 (-)
XLOC_021160 NA coding upstream 325805 24074089 ~ 24076285 (-)
XLOC_021149 CR388178.3 non-coding downstream 237072 23496815 ~ 23496929 (-)
XLOC_021143 BX936380.2 non-coding downstream 789416 22944461 ~ 22944585 (-)
XLOC_021142 NA non-coding downstream 872503 22825425 ~ 22861498 (-)
XLOC_021141 NA non-coding downstream 945273 22770522 ~ 22788728 (-)
XLOC_021161 NA non-coding upstream 440854 24189138 ~ 24195658 (-)

Expression


Co-expression Network