G148366


Basic Information

Item Value
gene id G148366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 45466156 ~ 45468794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU170163
CAAACCAGACTAGTTTTATTGTGCTGATTTACATAAAATTCTACAGATAAAAAGAACAGATGGTCTATTGTTGAAAATGAAAGTAATCTGAAAAAAAAACTACAGCATATCATACAATTCAAAGTGCATTTAGTAAAAGCTCATTTAAAAAGAGACCTGTCTACATACCGAAAGGGTAAAGACATTGATCTCTTAGAACAGCTGAAAACTTGaaagaaaacagaaaataaacaactAAGCGAAGCAAGAGAAAAACATTAACATTTTCCTTTTGACGCCTTTGAATAGAAACACGTTAAGTGACACATTCAAACATGAACATACAGACACTGTACAGGGGCTTAGGGGAGTCTTGAGAAACAATGGACATGATCGACTGACCATCATGGTTCTgctcattaggcaccaaacagaagaacgGACTATAATTTTCCTTCTCCGTTGCGAAACTTTGAAAACGTTGTTTATTGAGTGTCATAATAAGCACGACACAGCTCAAGACTGAAGGATCATCCTAAACAGCTAACGTGGAAAGCCGTTTCTCAATTGTTCCAGATGCCAATGGGAGCAATAGACAGAATAGCCGAGATAAAGAGTAGGGGGAATGTGAGCACAAGCCAGGGTCACCTGCTCACATCATTCAGCATTGATGCAGTTGGATATGGAACAAATGGCTGccattattcattttttttaatacaaaaaaatataattcAAATTGTACCTCTAAAGGTTTCCAAACAGTTTTGTGCCAACATGAACCCTGCTTTGAGAAAGTATGCTCCGACTAGATGAACCCTTGTCATTTTCTAAAAGTTTGAGTCTAGGGATGTAACGATTCACTGACGCGCATCGGTCCTTGGTTCAAATGTTAAAGACACTTGTGCATCGGTCTGCGGGATTCCAAAGCAATCCAAATTAAGCATCCATCATACATTGGTCAGAAAACCGATTCAAATCGCAAGTTCACAATTTTTGTTTTTACTCCATATTGTTTTATACCAAAAATACCTCTTATCTGTTGTGACAATTGATGCTGCCTCTCCTTCAGTTCAGTAGCCTATCAAACTTTTATGCATGTAACTGCGTATGTGCTGTCATATAACTGTGGCATAGTGCGAGAGACAACTGATCATGCCAACAAAAGGCAGGCCTATCCCTGTTCTAATAGGATACATCTGCGCACACCTTCAGCACTCAGATGCTTGCACAATGGCTTTTACAATGTCAAATCATAGGCTTTATTAGTTGAGTGACAACCAATGTAATTTGCTGGGTCATTGTTACAAGAACATTGTGCTTTACCGGAGTTGTGTAGCCTCTCACATGTGAGTTGTGGACAACTCACATCCAACTGTTGATTGGGGTTTTCATTCAGATTGTATTTCAATTGTTCAGGTTTTGGTAATTTTGCTTTCAACAGTCGGTGTATTTGGTCATTTTTAAACAAAGAAGGTAACTTCATAATGGACAGCAATCATTTTTGCAATCAATGGTCCAATAAATTTGCTTTTTAGACAGGGTAAAATCCAAAACTGCATTATCTTAATTGGCTAAATGCTATGTTCATTTCTAAAGACACATATTGACATAGTACTTACTAGCTCAAACATTTTCTTAAAAAATGACAAGTTAATCAGTGGGTGATGGTGATTTCTGataaagtggggggggggggggtacaaaaAGCAGAAATTGCCTTCCAtccctaatctgatagtggggtagtAGATGCTCAGTCTTCCCTATTGCTCAGCTCAggtgcctacacacacacacacacacacatcgactaacacacacacacagccactcagCTTAGAGAAGTCATCCCAACAGCAGCAGATATATCTTTAAAATAGAAAATGAAATGTGTTCATGCAAAACATTTGTGCATTGAAGCATATCGTATCTAACCAAATCACATTAATTCGCTCACCTAATCAAAAGGAATCTTTTAAAACAAAAAGGCATCATTCCTGTAGCGTATCAGTGCCCATGTATCTAGAATCTTTCATGAAAGGAGAGATGCACATCCCTAGTTGAGACGTATATTTATATCAGAGTGTAAGCTTTCCTTTACAGTGAGACAAGTAGCACAAACTCACACCAGCAACTGTCACACAATGTCAGAGCACATACTCTCACACCTCTCCTTTGATACCACTCCAACATTGTGACTATGGAAGCATATGGCTGCCaatattaataaaaaaaataaaaaataaatgcaagAATCAATGTTGGCAGACATTTGCTCCATATCAAACTGCATATTTTCCACATTAGTTATCCAAAAAGATGCATGTTTAGGAGATGTTCAAAACAAAACAGATTTGTTAGCTCTTTTCATACAATTTTAGGGCACGTCTtttagagagaagaggacagaccgagagagagagacaaaaagacagaTATAAAGAGGAGGACCTGTACagaaggagagactgggagaaagGGAGTGTGTATGGGTGTCCGCGGGGTCAGTAGAGGTCACTAAGGCCGGCGGTCTTGCGGGCTTTCTGCATGAGGGCTCGCAGCTGGAACTGCTTTCGGGAGAGCAGACGC

Function

NR:

description
hypothetical protein cypCar_00048946, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU170163 True 2571 lncRNA 0.39 2 45466156 45468794

Neighbor

gene id symbol gene type direction distance location
si:ch211-272n13.3 LOC106560721 coding downstream 71188 45278394 ~ 45394968 (-)
LOC118936755 LOC106560723 coding downstream 294300 45171198 ~ 45171856 (-)
LOC110490531 LOC106560723 coding downstream 297896 45134476 ~ 45168260 (-)
LOC110501628 LOC106588271 coding downstream 341312 45123713 ~ 45124844 (-)
LOC110501618 LOC106573044 coding downstream 393016 44757398 ~ 45073140 (-)
ldha ldha coding upstream 448 45469242 ~ 45491918 (-)
abtb2b abtb2 coding upstream 670462 46139256 ~ 46289343 (-)
b4galnt4a b4galnt4 coding upstream 849763 46318557 ~ 46756003 (-)
LOC118940396 LOC106604981 coding upstream 1121092 46589886 ~ 46592723 (-)
tmem86a tmem86a coding upstream 1403501 46844180 ~ 46921608 (-)
G148275 NA non-coding downstream 22403 45422620 ~ 45443753 (-)
G148287 NA non-coding downstream 181915 45284030 ~ 45284241 (-)
G148282 NA non-coding downstream 192454 45273436 ~ 45273702 (-)
G148104 NA non-coding downstream 208756 45257129 ~ 45257400 (-)
G148015 NA non-coding downstream 291429 45174516 ~ 45174727 (-)
G148399 NA non-coding upstream 45808 45514602 ~ 45520010 (-)
G149430 NA non-coding upstream 246973 45715767 ~ 45715997 (-)
G149455 NA non-coding upstream 282121 45750915 ~ 45816986 (-)
G149472 NA non-coding upstream 308440 45777234 ~ 45837990 (-)
G149502 NA non-coding upstream 352741 45821535 ~ 45872762 (-)
G147800 NA other downstream 602597 44863085 ~ 44863559 (-)
LOC110490449 scmh1 other downstream 887401 44571948 ~ 44606865 (-)
LOC110490352 NA other downstream 1030039 44434790 ~ 44464449 (-)
LOC110490298 LOC106605170 other downstream 1682437 43776063 ~ 43783884 (-)
G150290 NA other upstream 1377358 46846152 ~ 46849616 (-)
G150618 NA other upstream 1495940 46964734 ~ 46993665 (-)
G150675 LOC100653436 other upstream 1726099 47194893 ~ 47205433 (-)
G151474 NA other upstream 2381991 47850785 ~ 47851348 (-)

Expression


Co-expression Network