XLOC_021245 (si:dkeyp-34c12.1)


Basic Information

Item Value
gene id XLOC_021245
gene name si:dkeyp-34c12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 28739668 ~ 28777559 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041669
AGTATTGCCATCTTGTGGCCGCTAACTTTACCGCGGATCAGCTCATGATAGGAAGTAACACTTTTTCCTCTCGAAGCTTAGTTTTACAATTGCTTGCAGTTTAAAAGTAAGTCGGGTTTTGTAACCTTGTTCTTCAGCTAACTTCAGTTGTATATTTTAAGAGTTAAACAACACCGGCGGCTCATATGAGCTCGAAGAGAGGAAAGGTTAAACGCACCAAAAATGTGCGTAATTTGGATTTGGACGATGCGCCTTCTTTAGCGCAGTCAATAATCGAGAAAAATCATCCAAATATTATACCTGCAGGGCGACAGTTAGAAAGAACACCTCCATGTAAGAGCGAAAGAATCACAATACACCAGCTCAGCAAACCAGACGCTTCTCCAACAGCAGACCAAGCGGTCAAAGATGAGCCACGTGCtcagGAAATTGCTAAACCTGTTCCTCAGAATGGAAGTGAAGAGCGAGATGAGGGGAAGTCCATCAGGAGGTCTAGTTCAATAGTTGCATCAGCAACAACTGGGAATGCTGACCCCGAAAGCTTCATCCAAGGAATGCAGGGATATCAATGGACAGACACAGACCTGGAGTTTATATATGAAACCAAAAGGAAAAAGCAAGTTCAACAGGCGCAGCTGGAGTTAAGTGAAGTCCAGAAATCTCTGAAGAGAATGAGGCAAATGCGGGACTTGGCCATTGCTGCCCATGTCAAAATACAAACAGAGCTCTCTAAGGTGCCGTCGTGTGATCGGATGCAGCAGATTTCCTATAAAATACTTCTGAGGTCCCAGAACTCCAGTCAGCTGGAAGGACTTGATTTTAAAGCTCGACTTGCTCAGCTAAAGTATGCTAATGTGATCTGCACTATAGCCGAGGAGAAGACAGAGGTCAGCAAACTCAAGGCAGAACTGGAAAAGGCACAAGCAATGAGaGAAAAGGAGGAGCAACTCACGAAGGACATTGACAGCTATAAGGAAAAGATCAATCAAATCGAGGTAAACGTACATACACTGACTGCAGAAATAGCGGCTCTGGAATCCCAACTGTCTGGTAAAGAGAAATTGTGAGGAGAAACGGATGATGTTAGCTTCTGCCCAGGAAGCTGTACGACACCCAGGAGACTCGTCTTCCATCATCGGCCTCTATCTTCATCCAGACGGGCTTTGATTAGCGTAAATCTCCCGGCCTGCAGCGATCTCCGTTCCTGCCAGGCTTGACAGATAGAACGGAGTCTGCGCTGTGTACACTGGCACGCGGCTGGATGAGGATTTGTCCAATATGTGTTTGGAATATTTGTGCAGCAGTCTGAGACGCTCATGGTCTCGGTATTCAAAAATAAACCATCGGCGGAAAGCGACAGAGTG
>TCONS_00041670
ATGAGCTCGAAGAGAGGAAAGGTTAAACGCACCAAAAATGTGCGTAATTTGGATTTGGACGATGCGCCTTCTTTAGCGCAGTCAATAATCGAGAAAAATCATCCAAATATTATACCTGCAGGGCGACAGTTAGAAAGAACACCTCCATGTAAGAGCGAAAGAATCACAATACACCAGCTCAGCAAACCAGACGCTTCTCCAACAGCAGACCAAGCGGTCAAAGATGAGCCACGTGCtcagGAAATTGCTAAACCTGTTCCTCAGAATGGAAGTGAAGAGCGAGATGAGGGGAAGTCCATCAGGAGGTCTAGTTCAATAGTTGCATCAGCAACAACTGGGAATGCTGACCCCGAAAGCTTCATCCAAGGAATGCAGGGATATCAATGGACAGACACAGACCTGGAGTTTATATATGAAACCAAAAGGAAAAAGCAAGTTCAACAGGCGCAGCTGGAGTTAAGTGAAGTCCAGAAATCTCTGAAGAGAATGAGGCAAATGCGGGACTTGGCCATTGCTGCCCATGTCAAAATACAAACAGAGCTCTCTAAGGTGCCGTCGTGTGATCGGATGCAGCAGATTTCCTATAAAATACTTCTGAGGTCCCAGAACTCCAGTCAGCTGGAAGGACTTGATTTTAAAGCTCGACTTGCTCAGCTAAAGTATGCTAATGTGATCTGCACTATAGCCGAGGAGAAGACAGAGGTCAGCAAACTCAAGGCAGAACTGGAAAAGGCACAAGCAATGAGaGAAAAGGAGGAGCAACTCACGAAGGACATTGACAGCTATAAGGAAAAGATCAATCAAATCGAGGTAAACGTACATACACTGACTGCAGAAATAGCGGCTCTGGAATCCCAACTGTCTGGTAAAGAGGAGGCACTACGGCCAGCTAAACAATTGCAGCAAGTCAGAAAAGGCCTCCAAACCTCTGCTGCCTCTAATGCCAATAAAACCCATCCAGCACTTAAACCTTCCGCATCTGCAACAAAATCTTCTAGTGCTGCTTCTGCCACGAAACCTACTAGTGCCACTTCTGCAACGAAACCTTCCAGTATCAATTCTGCCACCAAACCTTCAAGTGGCGCTTCTGTCGCAAAAACTTCTAGAGCCACTTCTGCCCTGAAACTTTCCAATGATGCTTCTGCCCCGAAACCTTCCAGTGCCGAACATTCTGGTGCCACTTATGCACCTGAACCCTCCAAATGTTCCAGATCTCTGTCTCCCCTAAATTCTTCTAGCACCGCTTCTGCCCCTGAACCCTCTAAACCAACTATAGCCACTTCTGGACCCAAACCTTCCAGTGCTGTTTCTGCCACCAAACCCTCCAAATCTTCCCGTGCTGCTTCTGCCACCAAACCCTCCAAATCTTCCAGTGCTGCTTCTGCCACCAAACCCTCCAAATCTTCCAGAGCTGCTTCTGACCCCAAACCCTCAAAATCTTCCAGAGCTGCTTTTGCCACCAAACCTTCCAAATCTTCCAGGACTGCTTCTGCCCCCAAACTCTCCGAACCCTCAGCTGTCCCTAAACCCCCAAAATCCACTGCAACCCCTTCAAACCCCCTCAAACCACCTGCTACCATGAAAGACTCCAAAACTCTCAAACTCACCACCGGCATAAAGGCTTCAGCAGATGATGTTGCTGGTCTGCGCCGCTCTAAAAGAATTGCTTCTAAGAAAGATAAGTGATCAATTTGTTTAGAACCTTTTTCTTACTCTCATATATGATGCCATTTTTGTCTTGAAATCATGTTTTTGGAGTGGGaggatttacttttaaactgttttaaatttttttattaaaatcagaTGTAATTGACAAAATGGACAACATGCATTTAGATGTTttgcactcttttttttttctttaagccaTGCATTAAGAGTGCATTTTATTTtggaattaataaatgttttttcaaCTGTCTCTACATTTGTCTGGGCTGTGTTGTAAAAGGCTGTAGCTTCTTCAGAAAATCTGAGAAACCCAACATTGTGAGCAGCTCTTACAAATAATTTTCCTTTCTACTTAGAAATTAATTAGGTCAGTGCCTAATTGACCTAAACAACCCTGTGGCCAAATAATATCCTGTTGGAAATGATAGCTGATGTGCTTTGGAAAATAATGTCTTCTAGTTGTTCAAAGCTGGTAGACCAGCAAAAAAACCTGCTAAATCAACTGGTCAAGCAGAGGATTCAAGCTGATTTCCCCCCCTCCCCCAGCAAAGACTCTGTAGgcttacaaacttttattttagctacAGTAAGTGTAAACCTTGTTTTATGCATTATTGTAGAGAATTAAACTGGAATTTCCAGCATGGTAGGTAGTTTCACTTACAAGGACGCTAAAAACTGCAAGCTCTGCATTAGCAGAAAAAGCCTAATGCAAAGAAAAAGCCTAATGCAACACGAGACACAAAGAAGCACTGTAGACTCTTGCCAGAAAACACAAACACTATTCAGAAACCAAAAAGATGACACCCTAGAATCTTGCTAGAGTACCCGAGCAATATCCTGAAACCCTAGCAACAACTATAATCTAGCCATAACTAACAACACACCAAAGTCCAGTACACAAAGTAACCACCAAGCAAAcagcttaaaggggtggtccactatgatatcatatttgaaactttagttgatgtgtaaagtagctgtgtgaacataaacaacatctctgaatgtaaaaagttctaagttcaatgcaaagggagaccttggtttttacagaattagcttagcaaagcctacgatgaatgaattttggggactacaaaaaatacttccgccccctgtgagatcacaaaagttcgttactGCGCATTCCACACTTCGCATgcaggtaagggccgtggccagaggcgatgtaacgttatagcagagatgaagctaaaaatgcgtctaaacaCGGCTGTTCCTACAGAGCttcatctgtttctgtatttgggctttcaaaggacacaacacaaagacagaagtgcttagagttcaatattaattatgttccagagaattttaaaatacacagcaagcatgatttaacaaaacagctccagaatctctcccagtttagtgctggattcggctaaaatctcctcagcAGAAGCTATAAGCTACAaccagtaagtgtttttattagttaaaattgatcgttacatgtacagtgtctagcgttaacgatacgctgtagcaatgatgtaaacaatgggaaatgctgctttgcgggcaaataattgagctacaaattcatatttatcagacaaactgctgtaaacacacacacacacacacactccaccagcacgttcgtgtctcttatgtgtgtggactgcactgattgtcttcaggcagcttttccatgtgtttcacatctcagataatgaagttgcaaaagatatgtggatgattcatattacttacacctgcatattccggatacacGTGAAAGCCGTCGTGTAAtgcatagagttaaaaaaaaaaaaaaacaggttagcttacctgactcgtggtcgcagcagaataataaatcaaggctcaacaggtagcatcccacatcttgtgctttattcttctgtcacgatatattacagaaaacaacttaatccgagcatcagagaaaaagaaagtaccgcgcacatgcgcttgttacagaaagttcacacattcacacccacATTGACGCAGACAACATTCACACCGCACACACAATGGCaaactcttaaaggagccgcacctcattttcactcgttacagacacttgtcagattttattttagagcaggcaggaggttgactgcaGCAGAAAAGCGCAtgcttttacgggcgtgacgtggTGCCAATCCGGGAATAGCAGCTCATTATGacaatgaccaatcagagtcacttaagggcgggcctttcaaaggaactaggaaatatgacagtcattttcatgttagttgagtagctgtgtataattaAATTGAGATATATGAGAAAATaacgcgatttccttcaagtgaaacataagcacacattgctttgcatcttataaacacaacaaagccttaaaattacattgtggaccacccctttaacacaAGAGTTTACACAGAAAATTCTCTCTTACtccctccaggactaagtttgcCCACCCTTGGTCTAACCAGAATATCCTACAATCTAGCAACACACTGAAGCCATCCTGTACACTCTTTCAATTCACTAGAAACAGCACAGACACCATAGCAACACCCCAGAAATCACATTGAAAATCATAGCAACACCCTATTTTCTAACCAGAACACACTGGCAATATACAGAAACTACCTAGTACATTCGAATAACAACAATCCACATCCTAGACACTAGCAacagcaccctagcaacaccctatAATATAGCCACACCCCAAATTCTAGTTGGAAGGTCCTAGTAACACCTGGCCTGCAATTTAACAACACATTGAATTCAACAAAGTACATACTTGCTAAACACTAGAAATAATACAAGACAACATTGCAAAACCAGAGAAACCACATAGAACACCTAAAAGCATACAGTACAAAATAGTAACATCCTATAATGTAGAATGTagggccgtactcacactaggtacagttgcctcgaaccgggccaaagcatgcttgtcccccctcccgtctcacccgacggcccgcgctcacaccacaaatgggcctcggcacgcttacgtcatcaattCTGCAccgttcagtgagaagcgctctctcactcagcagcacagtggagatttctctagttatattgtttcagtcctttgttatgcagtgacatgcagttaaatatttcgccaaacagtccttagggatgagGTGActcgcagtcagatatttcgccgaacagatccgccactttgccgctcataaacaatcataaagccctcgtgctgcaggaatgaggaggtctgctgaagccgctacggcagtttgcgttcactgaacagtaagaatgattaataaatccatatcaaacccttaaaagtcacgtctcactttcagtttcgggctttgtcgcgttttgcactcacacacaagcgtatcgtgccaaagcccaagtgaacc
>TCONS_00041671
TATTGCCATCTTGTGGCCGCTAACTTTACCGCGGATCAGCTCATGATAGGAAGTAACACTTTTTCCTCTCGAAGCTTAGTTTTACAATTGCTTGCAGTTTAAAAGTAAGTCGGGTTTTGTAACCTTGTTCTTCAGCTAACTTCAGTTGTATATTTTAAGAGTTAAACAACACCGGCGGCTCATATGAGCTCGAAGAGAGGAAAGGTTAAACGCACCAAAAATGTGCGTAATTTGGATTTGGACGATGCGCCTTCTTTAGCGCAGTCAATAATCGAGAAAAATCATCCAAATATTATACCTGCAGGGCGACAGTTAGAAAGAACACCTCCATGTAAGAGCGAAAGAATCACAATACACCAGCTCAGCAAACCAGACGCTTCTCCAACAGCAGACCAAGCGGTCAAAGATGAGCCACGTGCtcagGAAATTGCTAAACCTGTTCCTCAGAATGGAAGTGAAGAGCGAGATGAGGGGAAGTCCATCAGGAGGTCTAGTTCAATAGTTGCATCAGCAACAACTGGGAATGCTGACCCCGAAAGCTTCATCCAAGGAATGCAGGGATATCAATGGACAGACACAGACCTGGAGTTTATATATGAAACCAAAAGGAAAAAGCAAGTTCAACAGGCGCAGCTGGAGTTAAGTGAAGTCCAGAAATCTCTGAAGAGAATGAGGCAAATGCGGGACTTGGCCATTGCTGCCCATGTCAAAATACAAACAGAGCTCTCTAAGGTGCCGTCGTGTGATCGGATGCAGCAGATTTCCTATAAAATACTTCTGAGGTCCCAGAACTCCAGTCAGCTGGAAGGACTTGATTTTAAAGCTCGACTTGCTCAGCTAAAGTATGCTAATGTGATCTGCACTATAGCCGAGGAGAAGACAGAGGTCAGCAAACTCAAGGCAGAACTGGAAAAGGC
>TCONS_00041672
TATTGCCATCTTGTGGCCGCTAACTTTACCGCGGATCAGCTCATGATAGGAAGTAACACTTTTTCCTCTCGAAGCTTAGTTTTACAATTGCTTGCAGTTTAAAAGTAAGTCGGGTTTTGTAACCTTGTTCTTCAGCTAACTTCAGTTGTATATTTTAAGAGTTAAACAACACCGGCGGCTCATATGAGCTCGAAGAGAGGAAAGGTTAAACGCACCAAAAATGTGCGTAATTTGGATTTGGACGATGCGCCTTCTTTAGCGCAGTCAATAATCGAGAAAAATCATCCAAATATTATACCTGCAGGGCGACAGTTAGAAAGAACACCTCCATGTAAGAGCGAAAGAATCACAATACACCAGCTCAGCAAACCAGACGCTTCTCCAACAGCAGACCAAGCGGTCAAAGATGAGCCACGTGCtcagAATGGAAGTGAAGAGCGAGATGAGGGGAAGTCCATCAGGAGGTCTAGTTCAATAGTTGCATCAGCAACAACTGGGAATGCTGACCCCGAAAGCTTCATCCAAGGAATGCAGGGATATCAATGGACAGACACAGACCTGGAGTTTATATATGAAACCAAAAGGAAAAAGCA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5347 No description available

Ensembl:

ensembl_id ENSDARG00000071083

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041669 False 1364 mRNA 0.46 8 28739668 28777559
TCONS_00041670 False 5084 mRNA 0.43 8 28765222 28777374
TCONS_00041671 False 917 mRNA 0.45 5 28774022 28777557
TCONS_00041672 True 593 mRNA 0.44 3 28775696 28777557

Neighbor

gene id symbol gene type direction distance location
XLOC_021244 col8a1b coding downstream 71226 28647130 ~ 28668442 (-)
XLOC_021243 jagn1b coding downstream 93992 28639026 ~ 28645676 (-)
XLOC_021242 NA coding downstream 107731 28628646 ~ 28631937 (-)
XLOC_021241 adgrg7.2 coding downstream 114260 28610372 ~ 28625408 (-)
XLOC_021240 adgrg7.1 coding downstream 150503 28588052 ~ 28589165 (-)
XLOC_021246 dre-mir-217 coding upstream 2156 28779715 ~ 28779812 (-)
XLOC_021247 dre-mir-216a coding upstream 2390 28779949 ~ 28780037 (-)
XLOC_021248 dre-mir-216b coding upstream 2698 28780257 ~ 28780333 (-)
XLOC_021249 NA coding upstream 9753 28787312 ~ 28789599 (-)
XLOC_021250 gtpbp2b coding upstream 80666 28858225 ~ 28871787 (-)
XLOC_021234 NA non-coding downstream 1140835 27593983 ~ 27598833 (-)
XLOC_021232 NA non-coding downstream 1175513 27499272 ~ 27564155 (-)
XLOC_021233 CR388079.2 non-coding downstream 1207306 27529632 ~ 27532362 (-)
XLOC_021230 BX927308.1 non-coding downstream 1500493 27238034 ~ 27239175 (-)
XLOC_021251 NA non-coding upstream 134319 28911878 ~ 28924270 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000015_06781386_06784362 NA coding CI01000015 null 6780551 ~ 6785111 (+)