XLOC_021422 (spata2)


Basic Information

Item Value
gene id XLOC_021422
gene name spata2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3513201 ~ 3521123 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042573
GAACATGAAGGTAAGGAGCGCTGGATGATGGGGAGGAGGGCGGCTTGGTAATGGTGCTGCCCTGCGCTACATGACACCGAACGGGTGTTCTTACACGCAAGTCTTGATCTTACAGAGCAGCTGGCATCATTGGACATGGTGTTTTTTAAGTGCACTCCAGTCCCGTGACCTTTAACCTATTGCAGCGGGGAAAGCCTGGCAGTGAGTGCTCAAAAAAAAGCAAGTCTCCATTCATCCTCTGCTCAATCCCACTCATATGCCATGTTGCTCCTTCTGATGTGTTTTGGCTGATGAGGCACCCAAATATGCCCCTTACAATGGGAGAGAGGCCTGGGCAAGGTGTACGCCCAAATTAAATCAAGCACACCTTGGAAGAACACATTCATTATTCCATATGTCTCTTTGGAGGTCCAATGTTGGCATGAAtttagccaatgctgctgatatggcattgtaacataaataaatatatatgtctCTCTTTGGAGGACGATCTCAGCTTGCTGATTTTCACTGCCACACTGCACCATTGCCCCAGATCTTCTGGTGTCTAGTGGGAGAGAGGTCTTGAGATGGCAAGTGGTCCTTTTTAAAGAAACACCTGGATTGTGGAATAAGAGGTTGCAAGCTACGCAGCCCACTGCCACCAATGGATGCCAAGTTGCGAGAGGATCTGTTCCGCAGGTATGTGGCTTCTCTGGAGAATCGGCTCGAGGAGGGAGCCGCTGAAGGAGGAGGAGATAGACAAGGAGCTAAGACCGAGGAGGCACTGATTTCTACTGCAACAGCATTGCTAGGCTCATACCAGGCTGATCCAGGGCAGCGATTTCGCATGCTTCGCTTCTATGATGTTGTTGAGAACTCCCTGAGGACTCAGAGAGGCACAAGCTTGCGGACAGTGGGAACAGCCTTTGCAACGCTGGAAACCATCTGCACCAATTTGCTGCTTTTTCCATGGAAGAAGGAGTACCGTTGCATAAAGACCTTCACAGGGCCATACGTGTACCAGTTGCAGTCTGTGTTATGCGACTCCGACCTGCGATCTCTACTGCGTTCCATGGGCTATTCAAGAGAACAGGAATTGCAGTACAATGTTAGGGACCATCCAGGTGGAGCTTCTCACCTTCGGCAGCTTGCTTTTGAACTGCTTCTGGCTCAGGCAGAGTGCCGTCTGTTGGGCGAGGTGGTTTCCATGTCTCGTGGCTTTGCCTCAGAGCTGGAGGCTGTGGAGTTGAGAAGAAACACCAGAGAAGATGCAGCGGGGTGTGCAGATGCCCTTCGTAGACGAGACAGCCTCACTGGAGATTTGTCCCGCCTGTCTGTGCGACCGCTAGATATTGATCGTGCCCACCTAAGGCGAAGCGGTCGCCCATCCAAGTCAGTGGATGTAACGGACAGCGCAGGACACTGGCACCAGGCCAGCAAGCCAGTGCTGAAGGCCTCACTCAGTCTGCGCAAGGAGCCGTTGTTTGTTGACACAGAAGAAGACATGAAGGACGAAATCATCCGACCTAGCCCCTCGCTCTATCCAGTGGCAGCGCCACCTTCTTACAGTCCAGTGGCTGACTTCTTCCCAATTCAGTCGCCCCCGTCAGAGCCATACTCTTACCACTTGTCCTCCCTGGACGAGGTGGACCTGTACACCGAGCGGGGGTTGGGTGGCCACCAGACACCCTCTAGGCCACCGAGCCGGGAGCCTCGAGACAGTTGGGTTTTGAAAGGACACATGATGAAGTGCCAGGGCTGTGGCATGGGCTGCCCTTCGCTTTCCTCTTGCCAAAGGTGCGACATGATCTTGTGCTCCTCTTGTCATGCGGTGGACCCAGCACCTTGTTGCGGCTTCCAGGATTACACTAAAACCTCCCGCCCTCTGGATGGCTACATGCCCATCAAGGAAAAATTGTCTGTCTACTCCAGTGCCCACTCGCACACCCACCCTCATCCTCACCCACTTCCCCACGCTCAGTCCCATTCGCTGTTGCTGGACAAAGCTGTGATGAGCTCCAAGCTGTTTCCCAGTAAACCTGTGGGTTCGGGCCCCAGTCCGGTGGGCAGCTTGGTCAGCAGTGGCAGCAGCAGCAGTGGGGGTGAGCGGCTGAGTGTGGGCGGCTCCCGCTGTGGCTTCTGCAACAAGCCAGGTGCCTCTCACACCTGTGTGAACTGCTCCAAGGTTTCATGTGACACCTGCATGAGCCTCTACGCCAGTGATTTGTGCACTCGCAAAAATCCCCATCATAACTTTGTGCCCAATCATCAACTCAATTTCAAATCCAGCACCATATCTCACCTCGTATATCGATAGACCAGAAACACAGTTGTGCACTACACCtctattgctttttttttctctgctttttttttcccacccTTGATTTCTGCTTTATTTAAGTTGTCCTGCTTCCTTTCTCCGTTGGCTATTGTTTGGTTTTGGTCATGTGATCTTGCAGTGCATTTCCTGTCCCTCAGTTGACTGTTCATAACTGTATGACTGGAGAGATCCATCTCAGTATCAGTGTTTGTTAActcggataaaaaaaaaaaa

Function

symbol description
spata2 Predicted to be involved in several processes, including protein deubiquitination; regulation of necroptotic process; and regulation of tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within programmed cell death. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; digestive system; head; otic vesicle; and pleuroperitoneal region. Orthologous to human SPATA2 (spermatogenesis associated 2).

GO:

id name namespace
GO:1990108 protein linear deubiquitination biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0012501 programmed cell death biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0010803 regulation of tumor necrosis factor-mediated signaling pathway biological_process
GO:0060544 regulation of necroptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04217 Necroptosis
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-070822-5 Predicted to be involved in several processes, including protein deubiquitination; regulation of necroptotic process; and regulation of tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within programmed cell death. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including brain; digestive system; head; otic vesicle; and pleuroperitoneal region. Orthologous to human SPATA2 (spermatogenesis associated 2).

Ensembl:

ensembl_id ENSDARG00000063250

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042573 True 2542 mRNA 0.52 3 3513201 3521123

Neighbor

gene id symbol gene type direction distance location
XLOC_021421 NA coding upstream 86841 3425601 ~ 3426360 (+)
XLOC_021420 NA coding upstream 186906 3317136 ~ 3326295 (+)
XLOC_021419 DHX35 coding upstream 580708 2914577 ~ 2932493 (+)
XLOC_021418 rab5if coding upstream 599729 2906031 ~ 2913472 (+)
XLOC_021417 plcg1 coding upstream 640382 2825940 ~ 2872819 (+)
XLOC_021423 NA coding downstream 16160 3537283 ~ 3537743 (+)
XLOC_021424 si:dkey-9l20.3 coding downstream 17340 3538463 ~ 3641439 (+)
XLOC_021425 smim29 coding downstream 199918 3721041 ~ 3744838 (+)
XLOC_021426 CU682640.1 coding downstream 392181 3913304 ~ 3915754 (+)
XLOC_021427 FP102158.1 coding downstream 418785 3939908 ~ 3944734 (+)
XLOC_021410 NA non-coding upstream 919589 2581048 ~ 2593612 (+)
XLOC_021408 NA non-coding upstream 957696 2554298 ~ 2555505 (+)
XLOC_021406 NA non-coding upstream 1045727 2463169 ~ 2467474 (+)
XLOC_021432 NA non-coding downstream 752793 4273916 ~ 4281107 (+)
XLOC_021441 LO017700.2 non-coding downstream 1038441 4559564 ~ 4677500 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000150_01413354_01415620 SPATA2 coding CI01000150 null 1412508 ~ 1415913 (-)