XLOC_021432


Basic Information

Item Value
gene id XLOC_021432
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4273916 ~ 4281107 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042608
agaacatgcaaactccacacagaaatgccaactgacccagccgaggctcgaaccagcgaccttcttgctgtgaggcgaacgtgctacccaaggctcaacagaaaataatatagaaaaatacaaaaatcatccaaactaaagtaaaattaagagtgaaaatgaaaaaataaataagaaatcaaTATAAAACAGATACCGGAAGTTACATGAgacaaataaatcaaacattttttgttttcattttagccaGGCCATGCgaaaagaataaaatatttgGCTAATACAATTATAACATTTATCAAATCGTGCAAAGCAGAACAATCTTCAGTAATTCCATATAGTACATCTTGTAATGTGAAGTCAAACCTTCAGCATCCAGTTAGAATTTTCCTGCCTAGGTTGCAGGATGGAAAGTTGCGCGTCTTTTAGGATGCGACAGTCACGTGATTCCTCGTCATACATTTGCGCAGGGCTCAAAGCTAGCAAGAAGAGGCTGTAGACACATTTCTTCTGatttaaaaaagctttttaaacTGCTGTTTATCGATGCTCTGGAAGGTGTGATACACAGAGAGTCTGTACCGGGAGAGTCGACAGACGGGCTGACTGATATACATACAAAGTGTCTGCGTACTGGAGGTTTTGCAGGTAAACAGTCATGACTGaccGAAGATTTGTGTTTGTCAATGAAGAAGAGCTGTTCGGCATGATGAAGGACATCGACTGCCTGTACTGTAGGATTCCAGTTATTGGATCTAAACATCACCTCAAAAAGAGACACCTCAGATTCGCCATCCATTATAAAGACTCTGACATTGGAAAGTTCTCGATCCCCTGTTACTGCTCTGATGGAGGTCATGGCAGGAGTCACTGGCATTGCCCAATGtgcaaaaaaatattacagagGACAAAGGATTTCAGAATCCACATCCACAACCATGGTGTTAAGATGACCGACAAATCCACAGCTGAGCTAGAACCTACGGCAGTTCTCCTGCAGACTCTACAaagcaataacaacaacaacagcagccaCAACAATAACGAAGACACGACTTCAAGCGGTAAGCTAACATGCCAGAAGTGCGGAGTCTACTTCACCACCGCGTCGAATTTGCGACGGCACGAGAGGCTGCAGCACGACCAAGACCAGCAGCCCATGTTATGCATAGATGCCAAAAAAGCCATCTACGTGACGCCCAAGGATCTGCACGGCCCCAGAGTGCCCATTCACATCCGCAAGTCCTTCGCCCTGCAGATTCTGCTGTGTGAGCTGGAGGAATGCTGGGACTTCATGAAGACGCAGGCCCAGAACGGGAATCCAGGGAAAGAGTGCCGTCACCTGGTCAGGACGAACCATGCGCGGGCTTACACCATGCCTCCACCACTGTGTGTGATCTCTCTGGAGGAAATGACCCACAAAAACCTCCTGTCCAAAGCGGAGGGCGAAGAGTGCCAGCAAATGAACTCCAAAGCATGTTCAGAGGGAGTCGACTGCGTCTACCCTATTCTCTGGGGGGAGCAAGACCTTCTATTAGAGCGCTGCATCTATTTTTCTGTGCACACGGGGCTCAAGGACAAATGGTGTCAGTTTGGAAGGACGCGCGTCTCATTTGACATCAGATCCAAAGTCTGGAAGTGCCAGTGTGAAGGTGGCGGAGACCACAGCTGTGTTCACAAGTGTCTGTCCATGTGGTGGCTGTTTCAGGAGCGTCCCGAGCTGCTGGAGAATACCATCGAAATCACCGTCGAGAGAGTGGACTTGATTGAGGAGGTGGTCATGAATGCAGAAGATGCGAATAAAATGTCTACAGAGGTCGATGAGCTCTGCTAGGTTCACCCTTAAGAAGTACAGGCTCATTTTCTGTGATTAAAACACTGGGCGTACTGTT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:1903313 positive regulation of mRNA metabolic process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0036002 pre-mRNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042608 True 1892 lncRNA 0.46 6 4273916 4281107

Neighbor

gene id symbol gene type direction distance location
XLOC_021431 srsf6a coding upstream 1932 4260458 ~ 4271984 (+)
XLOC_021430 arl6ip5b coding upstream 14204 4253957 ~ 4259712 (+)
XLOC_021429 zgc:113278 coding upstream 30363 4226341 ~ 4243553 (+)
XLOC_021428 b4galt5 coding upstream 202168 4022620 ~ 4071748 (+)
XLOC_021427 FP102158.1 coding upstream 329182 3939908 ~ 3944734 (+)
XLOC_021433 l3mbtl1 coding downstream 7857 4288964 ~ 4295743 (+)
XLOC_021434 l3mbtl1a coding downstream 18780 4299887 ~ 4318418 (+)
XLOC_021435 sgk2a coding downstream 43518 4324625 ~ 4344591 (+)
XLOC_021436 mybl2a coding downstream 67158 4348265 ~ 4357768 (+)
XLOC_021437 adtrp1 coding downstream 81356 4362463 ~ 4367415 (+)
XLOC_021426 CU682640.1 non-coding upstream 358162 3913304 ~ 3915754 (+)
XLOC_021423 NA non-coding upstream 736173 3537283 ~ 3537743 (+)
XLOC_021421 NA non-coding upstream 847556 3425601 ~ 3426360 (+)
XLOC_021420 NA non-coding upstream 947621 3317136 ~ 3326295 (+)
XLOC_021441 LO017700.2 non-coding downstream 278457 4559564 ~ 4677500 (+)
XLOC_021448 NA non-coding downstream 848875 5129982 ~ 5141915 (+)
XLOC_021452 NA non-coding downstream 1314541 5595648 ~ 5623669 (+)
XLOC_021455 CABZ01026153.1 non-coding downstream 1590399 5871506 ~ 5922464 (+)
XLOC_021460 NA non-coding downstream 2047239 6328346 ~ 6341688 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000150_00404464_00407280 NA coding CI01000150 null 404406 ~ 407280 (-)