XLOC_021437 (adtrp1)


Basic Information

Item Value
gene id XLOC_021437
gene name adtrp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 4362463 ~ 4367415 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042618
AACTCTTGTGCTGACGTTGTCTTTCCGGCGGTGACGTCAGATACCAATGATGGCTGCCTCCACGAGACTGGGACCAAAGGTGTTGCTGCTGGTCCACCTGGGTGTTTTCAGCTGGTATTTGTTCACTATCTGGAGCAACTGTTCCCTGCAGACCGCAGACAGACACCCGGGTTTGCGCTCTTATGGAGGGCGCTGGAAATATCTGACGTTTATTAATTTGGTGATGCACGCGGTGTTTTTCGGGCTGTGTGTTTTAGTGGATGCCGTGCACAGTGCGGTGTCCGTCAACCAGAGCCGCAGCGGGACTCCTCTGAATCTCAGCCGAGCCAGAGACTTTTACTTTACTGTCCTGGCGTTTCCGGTTGGCACGTTTGTTTTCGTTTCCTTCTGGACTCTCTACACTTACGACCGAGAGCTGGTGTATCCTAAACTGCTGGATGAGATCATTCCCATTTGGCTCAATCATGCAATGCACACAGTGATCATGCCTCTGCTGCTGCTGCAGATGTTCCTTCAGAATCACAGATATCCCAGTCGCACAGCAGGGATTTTCAGCCTGGCTGTGTTTGTGGCTCTGTATCTGTCATGGGTTTTGTGGGTGCACCATGCTTCAGGGATTTGGGTGTATCCCATCATGGCTCATTTGAGTCCTGTGGGATTGTGTGTTTTCCTGGGTGGAGCGTCCCTCTCCATGGCTCCTCTGTACCTGTTAGGAGAGAAGCTGAGCCTGATGATGTGGAGCAGCACAGGGaatcagaagaagaaaaagaagtagATGTCTGCAGGACACCACATAACCGCATGGCTCTCAACACCAGCCAAACAGAAGTGATTTTACAGGGAATGAAGGAACAGCTTTAATTGAATTGCTTGTGTTTTATACAAGGGGGTTTCAATTCACAGACAGGAGCTAAgatacattcatactgtacatgTGGTATGTATACACTAATTTAGCTGAAGTTTTATTCCGTTTTTGGCTTTTGACCTAATTTTGCAAAATCAAAATGATGCACTTACACTAACAAAACAATGCACTTACAAATGAGAAATGCTGTATTTTTAATAGATTACTTTATTGTGAATTTTCCAAGACtgtacagggctcaacaataaggactgcccgatggcccaggCCCAGCGttagagatgctcgggacagtagacggAATCGTTGCTGGCCCAATCggggcagtgctgccttgtcactaaatttaAATAGACGGCAACATGACCGCAACATCAAAtcatgaggctaaaagaaaacgtctgtttctaacgttgtggaaacatttaaatgggtacagcacgaaaaaaaaaaaaa

Function

symbol description
adtrp1 Acts upstream of or within definitive hemopoiesis and hematopoietic stem cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in cardiovascular system and lateral plate mesoderm. Orthologous to human ADTRP (androgen dependent TFPI regulating protein).

GO:

id name namespace
GO:0060216 definitive hemopoiesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-220 Acts upstream of or within definitive hemopoiesis and hematopoietic stem cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Is expressed in cardiovascular system and lateral plate mesoderm. Orthologous to human ADTRP (androgen dependent TFPI regulating protein).

Ensembl:

ensembl_id ENSDARG00000037810

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042618 True 1324 mRNA 0.47 6 4362463 4367415

Neighbor

gene id symbol gene type direction distance location
XLOC_021436 mybl2a coding upstream 4695 4348265 ~ 4357768 (+)
XLOC_021435 sgk2a coding upstream 17872 4324625 ~ 4344591 (+)
XLOC_021434 l3mbtl1a coding upstream 44045 4299887 ~ 4318418 (+)
XLOC_021433 l3mbtl1 coding upstream 66720 4288964 ~ 4295743 (+)
XLOC_021432 NA coding upstream 81356 4273916 ~ 4281107 (+)
XLOC_021438 ptpdc1b coding downstream 5921 4373336 ~ 4390318 (+)
XLOC_021439 wnt7ab coding downstream 46749 4414164 ~ 4433220 (+)
XLOC_021440 nup210 coding downstream 115668 4483083 ~ 4557964 (+)
XLOC_021441 LO017700.2 coding downstream 192149 4559564 ~ 4677500 (+)
XLOC_021442 gp9 coding downstream 322211 4689626 ~ 4692550 (+)
XLOC_021427 FP102158.1 non-coding upstream 417729 3939908 ~ 3944734 (+)
XLOC_021426 CU682640.1 non-coding upstream 446709 3913304 ~ 3915754 (+)
XLOC_021423 NA non-coding upstream 824720 3537283 ~ 3537743 (+)
XLOC_021421 NA non-coding upstream 936103 3425601 ~ 3426360 (+)
XLOC_021448 NA non-coding downstream 762567 5129982 ~ 5141915 (+)
XLOC_021452 NA non-coding downstream 1228233 5595648 ~ 5623669 (+)
XLOC_021455 CABZ01026153.1 non-coding downstream 1504091 5871506 ~ 5922464 (+)
XLOC_021460 NA non-coding downstream 1960931 6328346 ~ 6341688 (+)

Expression


Co-expression Network