XLOC_021446 (ube2t)


Basic Information

Item Value
gene id XLOC_021446
gene name ube2t
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 5104743 ~ 5108055 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042637
AACATTTCGCGGGCAGAATCAAAACCACACAAGTCAACCAGCCAGCCGGAATTTTCAAGCAAAGCTGGACGTCGCCATGCAGAGAGTCAGTCGTCTGAAGCGGGAGATGCAGCTCCTCACCGCTGAACCTCCTCCAGGAGTCTCGTGCTGGCAGTCAGAGGGACGCCTGGATGAACTACAAGCCCAAATTGTTGGAGGTGCAAACACTCCGTATGAAGGTGGTGTGTTCACATTGGAAATCAACATACCTGAGAGGTATCCATTTGAACCTCCAAAAATGCGTTTCCTGACTCCCATTTATCACCCCAACATTGATAATGCAGGACGCATTTGTCTTGACGCTCTGAAACTGCCACCAAAGGGAGCTTGGAGGCCCTCGCTTAACATTTCAACAGTTCTCACATCCATACAGTTATTGATGGCCGAACCAAACCCTGACGACCCTCTCATGGCTGATATATCCTCAGAATTTAAATACAACAAACCACTATATCTTGAAAAGGCAAAGAAATGGACAGCTGAGCATGCAATTCAGAAGAACAAGGGTTGCGTGGAGACGGATGGAAAGCCTCCTGagaataaaaatctgaaaacctCACACAAGAGAGAAGCACTTAGTGCGCAGGAGAACTTAGAGCACACCAAAAAAGTGTGCTTGTAGCAGCTCTATTTCACTGATGACTGATATACAATTTTGAGTTGTTTATTGTCTAAATTGTTACTCTGGCTTGATTATTTTACTTGTGTATAATTgatgttaatgtaataaaatatttaaaatggt

Function

symbol description
ube2t Predicted to enable chromatin binding activity and ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair and protein ubiquitination. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group T. Orthologous to human UBE2T (ubiquitin conjugating enzyme E2 T).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061013-547 Predicted to enable chromatin binding activity and ubiquitin conjugating enzyme activity. Predicted to be involved in DNA repair and protein ubiquitination. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group T. Orthologous to human UBE2T (ubiquitin conjugating enzyme E2 T).

Ensembl:

ensembl_id ENSDARG00000063285

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042637 True 784 mRNA 0.44 7 5104743 5108055

Neighbor

gene id symbol gene type direction distance location
XLOC_021445 tnnc1a coding upstream 208867 4890693 ~ 4895876 (+)
XLOC_021444 vgll4a coding upstream 254798 4777348 ~ 4849945 (+)
XLOC_021443 raf1a coding upstream 357466 4709607 ~ 4747277 (+)
XLOC_021442 gp9 coding upstream 412193 4689626 ~ 4692550 (+)
XLOC_021441 LO017700.2 coding upstream 427243 4559564 ~ 4677500 (+)
XLOC_021447 zgc:194242 coding downstream 319 5108374 ~ 5112998 (+)
XLOC_021448 NA coding downstream 21927 5129982 ~ 5141915 (+)
XLOC_021449 tulp1a coding downstream 357751 5465806 ~ 5498539 (+)
XLOC_021450 tead3a coding downstream 391252 5499307 ~ 5558256 (+)
XLOC_021451 smpd2a coding downstream 457206 5565261 ~ 5587934 (+)
XLOC_021432 NA non-coding upstream 823636 4273916 ~ 4281107 (+)
XLOC_021427 FP102158.1 non-coding upstream 1160009 3939908 ~ 3944734 (+)
XLOC_021426 CU682640.1 non-coding upstream 1188989 3913304 ~ 3915754 (+)
XLOC_021423 NA non-coding upstream 1567000 3537283 ~ 3537743 (+)
XLOC_021452 NA non-coding downstream 487593 5595648 ~ 5623669 (+)
XLOC_021455 CABZ01026153.1 non-coding downstream 763451 5871506 ~ 5922464 (+)
XLOC_021460 NA non-coding downstream 1220291 6328346 ~ 6341688 (+)
XLOC_021463 NA non-coding downstream 1527030 6635085 ~ 6661864 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000002_01146170_01149966 NA coding CI01000002 null 1146068 ~ 1150051 (-)