LOC110509927 (LOC106578751)


Basic Information

Item Value
gene id LOC110509927
gene name LOC106578751
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12856694 ~ 12860589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969513.1
TGACCCAGCTAGCTACCCGTGACAGACAAAGTGATGAGCTCAGGAGACTCCAACCCCGCCGCCACACCCACTCCTTGTGTGGACATCCAGGGAGATGGCAGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGCACCAATTTGAGGTGTGGCGAGAGCTGTTCTCCCCTCTCCACGCTCTCAACTTTGGGGTGGGTGGTGACGAAACACAGCACGTCTTGTGGAGATTGAGCAATGGAGAGTTGGCCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCCATAATCACGGTCACACTGCAGAACAGATCTGTGGAGGCATTATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTCGTACTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACCCCCTGCGGGAGAGGAACGCCCAGGTCAACAAGCTGGTCAAGGATGCAGTGTCCTCTCTCCCCCACGCCTCCCTCCTCAATGTTGACCCCGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTTCCTCCACCTCACCCCTCAGGGCTACCAGGCTGTGTGCCAGCCGCTACACGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAATACCAGCTGATGGAGAACTGATGGCCAATGACCCACTCACTACATCAGAGGTAAAatccctggtcctggagagccaCAAGAGTACAGGCTTTTAGCACATTCACTGCTTTTAGAACACTTTTTAGTATTTAAGTATAGACTTTTGTTCCAACCCATGATTCAAATAATGATCTAGtccttgattagttgaatcacgTTGAATGTTTTGAATGCTGGGCTGGAAGAAAAGCCTGAACTTAAAAGGCTTTCCAGAACCAGGGTTGGTAACCACTGCACAACTCTATtctatgggaccgtactgtaacTTACCACCAAAATGGCTGCGTAGAGGACCGCTAAACACTAATAGGATCAAATATCTGTGTTAGTAGTCAGATTTGACCACTTATCACCAATTGAGATGTGATTGAGCGGATTTAAGAGATTGTCCTTCTCTTCAGTTTCATTCTGTATTATGGATATCATGCACCAATATGTTAGGATCTGTCTTTCCTGGCTGTTAGATACTTCATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCAGAAAACCTACCATactaaaggtttgttttgtttccTCTCAAAATATCAACATTTCCTGTCTTTTTCTCCTCACTTTGAAAACatctacagtcctattgatcTGATTGGTTACTGATCTGATTGGTTACTAATAATATCATTTAAAATCCCTCAAATTGTGTCCCATATGTGTTTAGACACGGCGACCATTTACGGTGACGATGCAAGAAGGCATCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTACTTGTTTCCGGTATCTGTTTGCCACCGTTGCTTTTTGTTACTTGTGAAGATTTAGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGTAGAAATATGGAGAATGAAGGGGAATGGTATGGTGTATTTGGAGTGAATGATGAGGGCATTTCAAAGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGATATGACATgatactgagtcagtgtgtatGGATGTGTTGTAGCTAGCTTATACTTGTCTTGCACTCTTTATTCAAAGGCAGTCACCTCACGAGACCCAAGACTCCCTATAAAGGCTGCATAGACTGTTTGTATATACTGCAAATGTAGTCCTAACTTTCTCTGTGTCTTGAATGTTGattgtggaaaaactgaataTGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTACA
>XM_021591149.2
TACTTTCAGGAACTATCAGGCAGCCCGAACCTCAATTACGGTATTGTAAAACAGTAATACCTGTTAGCTATTCAGCAACCACACCTATTAATATGAAAAAGTCTGTACGTTGATGCACCACATTGCCAATGCATCATTGACAGACAAAGTGATGAGCTCAGGAGACTCCAACCCCGCCGCCACACCCACTCCTTGTGTGGACATCCAGGGAGATGGCAGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGCACCAATTTGAGGTGTGGCGAGAGCTGTTCTCCCCTCTCCACGCTCTCAACTTTGGGGTGGGTGGTGACGAAACACAGCACGTCTTGTGGAGATTGAGCAATGGAGAGTTGGCCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCCATAATCACGGTCACACTGCAGAACAGATCTGTGGAGGCATTATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTCGTACTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACCCCCTGCGGGAGAGGAACGCCCAGGTCAACAAGCTGGTCAAGGATGCAGTGTCCTCTCTCCCCCACGCCTCCCTCCTCAATGTTGACCCCGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTTCCTCCACCTCACCCCTCAGGGCTACCAGGCTGTGTGCCAGCCGCTACACGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAATACCAGCTGATGGAGAACTGATGGCCAATGACCCACTCACTACATCAGAGGTAAAatccctggtcctggagagccaCAAGAGTACAGGCTTTTAGCACATTCACTGCTTTTAGAACACTTTTTAGTATTTAAGTATAGACTTTTGTTCCAACCCATGATTCAAATAATGATCTAGtccttgattagttgaatcacgTTGAATGTTTTGAATGCTGGGCTGGAAGAAAAGCCTGAACTTAAAAGGCTTTCCAGAACCAGGGTTGGTAACCACTGCACAACTCTATtctatgggaccgtactgtaacTTACCACCAAAATGGCTGCGTAGAGGACCGCTAAACACTAATAGGATCAAATATCTGTGTTAGTAGTCAGATTTGACCACTTATCACCAATTGAGATGTGATTGAGCGGATTTAAGAGATTGTCCTTCTCTTCAGTTTCATTCTGTATTATGGATATCATGCACCAATATGTTAGGATCTGTCTTTCCTGGCTGTTAGATACTTCATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCAGAAAACCTACCATactaaaggtttgttttgtttccTCTCAAAATATCAACATTTCCTGTCTTTTTCTCCTCACTTTGAAAACatctacagtcctattgatcTGATTGGTTACTGATCTGATTGGTTACTAATAATATCATTTAAAATCCCTCAAATTGTGTCCCATATGTGTTTAGACACGGCGACCATTTACGGTGACGATGCAAGAAGGCATCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTACTTGTTTCCGGTATCTGTTTGCCACCGTTGCTTTTTGTTACTTGTGAAGATTTAGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGTAGAAATATGGAGAATGAAGGGGAATGGTATGGTGTATTTGGAGTGAATGATGAGGGCATTTCAAAGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGATATGACATgatactgagtcagtgtgtatGGATGTGTTGTAGCTAGCTTATACTTGTCTTGCACTCTTTATTCAAAGGCAGTCACCTCACGAGACCCAAGACTCCCTATAAAGGCTGCATAGACTGTTTGTATATACTGCAAATGTAGTCCTAACTTTCTCTGTGTCTTGAATGTTGattgtggaaaaactgaataTGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTACA
>XM_021591157.2
TTGTATGCGCTTACATATCACTAGACTGGAAAAAACAACAATATTTTACTGAAGTAGCTCACCTATGCGTGGTCAATGGTACATTCTATAGTGACTTGAAATTTTACTTTCAGGAACTATCAGGCAGCCCGAACCTCAATTACGACAGACAAAGTGATGAGCTCAGGAGACTCCAACCCCGCCGCCACACCCACTCCTTGTGTGGACATCCAGGGAGATGGCAGATGGATGTCTTTGCATAACCACTTTGTGTCTAACAGCAAGGACAAGGAACCTGATGTCCTGTTTGTAGGAGACTCTCTTGTCCAGCTCTTGCACCAATTTGAGGTGTGGCGAGAGCTGTTCTCCCCTCTCCACGCTCTCAACTTTGGGGTGGGTGGTGACGAAACACAGCACGTCTTGTGGAGATTGAGCAATGGAGAGTTGGCCCACATCAGCCCAAAGGTTGTGGTGCTGTGGGTGGGCACCCATAATCACGGTCACACTGCAGAACAGATCTGTGGAGGCATTATGGCCATAGTCCAACTCATCAAGGACAAGCTGCCGAAGGCTTACACTCTCGTACTGGGAGTGCTGCCCAGGGGTAAGATGCCCAACCCCCTGCGGGAGAGGAACGCCCAGGTCAACAAGCTGGTCAAGGATGCAGTGTCCTCTCTCCCCCACGCCTCCCTCCTCAATGTTGACCCCGGCTTTGTGCACTCGGACGGCAGCATCTCCCACCAGGACCTGTATGACTTCCTCCACCTCACCCCTCAGGGCTACCAGGCTGTGTGCCAGCCGCTACACGCCCACCTCAAGGGCCTGCTGGAGAAACAGGCTGAAAACTGAATACCAGCTGATGGAGAACTGATGGCCAATGACCCACTCACTACATCAGAGGTAAAatccctggtcctggagagccaCAAGAGTACAGGCTTTTAGCACATTCACTGCTTTTAGAACACTTTTTAGTATTTAAGTATAGACTTTTGTTCCAACCCATGATTCAAATAATGATCTAGtccttgattagttgaatcacgTTGAATGTTTTGAATGCTGGGCTGGAAGAAAAGCCTGAACTTAAAAGGCTTTCCAGAACCAGGGTTGGTAACCACTGCACAACTCTATtctatgggaccgtactgtaacTTACCACCAAAATGGCTGCGTAGAGGACCGCTAAACACTAATAGGATCAAATATCTGTGTTAGTAGTCAGATTTGACCACTTATCACCAATTGAGATGTGATTGAGCGGATTTAAGAGATTGTCCTTCTCTTCAGTTTCATTCTGTATTATGGATATCATGCACCAATATGTTAGGATCTGTCTTTCCTGGCTGTTAGATACTTCATAAGAGCTTCCCCACAGAAAGGTTAGGAGAATCAGAAAACCTACCATactaaaggtttgttttgtttccTCTCAAAATATCAACATTTCCTGTCTTTTTCTCCTCACTTTGAAAACatctacagtcctattgatcTGATTGGTTACTGATCTGATTGGTTACTAATAATATCATTTAAAATCCCTCAAATTGTGTCCCATATGTGTTTAGACACGGCGACCATTTACGGTGACGATGCAAGAAGGCATCACTTGGCCAGTTGGCTCCACTGTTAAAGCATTACTTGTTTCCGGTATCTGTTTGCCACCGTTGCTTTTTGTTACTTGTGAAGATTTAGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGAATATGTCTTATTTTGGCTGTAGAAATATGGAGAATGAAGGGGAATGGTATGGTGTATTTGGAGTGAATGATGAGGGCATTTCAAAGTAGCGCTGAGACTGGTGGGTATTTGGCTTGGATATGACATgatactgagtcagtgtgtatGGATGTGTTGTAGCTAGCTTATACTTGTCTTGCACTCTTTATTCAAAGGCAGTCACCTCACGAGACCCAAGACTCCCTATAAAGGCTGCATAGACTGTTTGTATATACTGCAAATGTAGTCCTAACTTTCTCTGTGTCTTGAATGTTGattgtggaaaaactgaataTGTGATGTCAAAATGCAATGCATTAAAACCAATGAAAGCTTACA

Function

NR:

description
PREDICTED: platelet-activating factor acetylhydrolase IB subunit gamma-like isoform X2

GO: NA

KEGG:

id description
K16795 PAFAH1B2_3; platelet-activating factor acetylhydrolase IB subunit beta/gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969513.1 False 1956 mRNA 0.45 6 12856694 12860099
XM_021591149.2 False 2074 mRNA 0.45 6 12856694 12860485
XM_021591157.2 True 2079 mRNA 0.45 6 12856694 12860589

Neighbor

gene id symbol gene type direction distance location
LOC110509869 NA coding downstream 92713 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 98514 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 102908 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 111007 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 124291 12727064 ~ 12732403 (-)
tlr21 LOC106605556 coding upstream 4353 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 20296 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 64865 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 478604 13339193 ~ 13341845 (-)
LOC110510138 trp-ii coding upstream 485520 13346109 ~ 13347872 (-)
G225391 NA non-coding downstream 8999 12847436 ~ 12847695 (-)
G225370 NA non-coding downstream 12795 12841311 ~ 12843899 (-)
G225368 NA non-coding downstream 33565 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding downstream 35619 12814937 ~ 12821075 (-)
G225369 LOC106578676 non-coding downstream 36559 12813999 ~ 12820135 (-)
G226019 NA non-coding upstream 50881 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 96854 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 110512 12971101 ~ 12971823 (-)
G226065 LOC106605724 non-coding upstream 111969 12972558 ~ 12985792 (-)
G226106 LOC106578882 non-coding upstream 173984 13034573 ~ 13036569 (-)
G225171 LOC106605713 other downstream 383634 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 398903 12454388 ~ 12457791 (-)
G225099 NA other downstream 515728 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 775461 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 840593 12014926 ~ 12016101 (-)
G226124 NA other upstream 206284 13066873 ~ 13067357 (-)
G226187 NA other upstream 316589 13177178 ~ 13180272 (-)
G226224 NA other upstream 363295 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 483485 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1066085 13909746 ~ 13927861 (-)

Expression


Co-expression Network