tlr21 (LOC106605556)


Basic Information

Item Value
gene id tlr21
gene name LOC106605556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12864942 ~ 12875688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591169.2
CAGGGATTAAGAGACAGGCTTTCATAATGTAGCAGAAAGGACATGATACAGGCATGATACAGCCACCAAAATGGAGCTGGCTTTCTTATCAGCATTCTCAACCATGGAGAATAAAGGAGTATAATTCAGGATGATTATCACAGCCATACAACTCTTTTGAAGAAAGAAAATCATCTGCTTTATTTTCCCAATGCATGCATTTCCTGGAACTTAAAATGAATGTACTGTGATTTTAAAGGACAGGATTCTCCTTGGAAAGATTTCAGAACCATTGGACAGGATGTAGAACCTTACTCACCTTATTCCTCTACTGCTGCACTCGTCAGACAATATGGCCGggttaaaatataaaatattagtATCAGTAGCAATTGTCCTTCACATTGCCAAGTTCACCGTTGGCTATAGCTTCAGGAATTGCACTGAGGACCCAAACTCAAACCACACAACATTCCTTTGTATACGTCACCAGGCAAAGAACATATCTGCCATTATAGGTGACCTGCCACCCTATGCCACCACAATTATAATCTCCATAAACCTGATAAAACACATACCTGACAATAGCTTTGTTCACCTTCCTAACCTCAGGACACTTCAGATTGACAATAACCATCTGGAGACCATAGACAACCAGGCATTCCAAAATATGAGCCAACTGAAGAGCCTAAACCTGTCCTTGAACAAAATATCAAATCTCAGCTCCTCTGTGTTTCAAGACCTCAAAAACCTTGTCAACCTGTCACTAAATAATAACTCAGTGATTAGGCTCCCTCCAGGTATTTTCTCCTCACTCTCCAATCTGGATGTCCTCACATTACGGCAGAACTACCTGAACAACTTCTCTGCGGTGGCAGAATCTGTGACTCACTTATCGAAGCTGACGAAACTAGACCTGTGCAATAACTATCTAACGTCCCTCCATCATTCTAACCATACAGACCTACCAGAGTCCCTCACCACCCTCTATCTCTGTAAAAACAAACTGGTCACTTTAGCATGTGAGTGGGGATTCCTCAGCCATGTACTACTGCTGGATCTCTCCTACAATGACCAGCTCCCTTCAAGGGCTTTCCAAGGTCTGGACTTGCGGAAGCTAAACTACATGCGTTTGCATTCAACCAATGTTACAGTGCCAGAACTTTTGAATGTCAGCAATGTTAGAGGTGGAAACATAGACTTCTCTGGTATGGGGTTGAAGACTGACAATCTGCTCATGGAGTTATGCAGCCTTTTGAGTACAAAGGTCAAATTTGTTAAAAAGCTGAGTCTGGGAAGCAATGGGATTCTGTCATTGCGAAAGAACACACTTTCAAACTGTCCACCAATCCGAGGTTTATTGGACCTTTCCTTTAACCAGTTGAAGAAGGTAAGATGCCTCCACTTTCTCAAAGGACAGGATCAAATCAAGAAATTCACAGCAGAGAAAAACCACCTCACCTCCCTAATGTCCTGCAACAGACAGAACCTCTCTTTCCCAAATCTGACAGATCTGAGCTACCGTTACAATCGCATACTCAAAGTCAACTCTTTTGCTTTCCACCACACACCAAATGTGAAGACCCTACAACTCAACATAAACATAATCGCCTATCTTGACCATAAGGCTTTCAGTGGGCTGACTAATCTTGTCACACTGCGTCTGGACAATAACCTCCTGACCGATCTGTACCAGGATAGCTTTGAAGATCTGCATAGCCTGGAAATACTTAACCTACGTAACAATCAGATAGCTGTTCTTTTCAACAAGACTTTCCATTCACTCAAACACCTGCACATTTTGGATCTTGGAGGGAACAAAATCACTCATTTTGAAGAGTCAGCCTTTGTGGGGCTCGATAACCTGGCCAATTTTTACCTTGATGGAAACAATCTCAAACAGATTGACAGCTCCAAGTTTAAACCATTCCATGCTACTCTTGAAGTTCTTGATCTACATGGGAATCAGGTTAGCTTCTCTTCTAAACATACCAACTCTCCTTTTGTGAATCTAACAAAACTTCGCAACCTCAAACTAGATGCGCAGATGCCCCACGGCCTCAACATGCTGCCTTATGCCTTTTTCCGTGGTCTCAACTCCCTCCAATCGCTCTACCTTACCGACAATCACATCTTCAGCTTCGCAGCAGACACTTTTGACGATCTGACCAACTTGACTTTCCTCTCCTTGGACAACTCCTGTGCCGGGGTGATGCAGCTGCAGCCGGGTGTCTTCAAAAACCTGCGGAAATTGAGCAAGCTCAGTGCAAGGAACATGGGCATCCAGTCCTTCTCAAAGGAGGTTTTTGGGAATCTGACAGAGCTGCAAATCTTGCTTCTCAACCAAAACGTAATGCAATCCTTAGATGTGAATGTGCTGGAGGCTCTACCTAAATTGCGCTACCTGGACCTGCGCAACATTCCTCTTAGTTGCACCTGCCTCAACAGTGACCTGCAGAACTGGACTTTGACTAACCAGAGAGTCCAGTTAGTCCTACTATACAGTCTACAGTGCCAAGATAAAAAACTCCAAAAAAGCTTCTACAACTTCGACACCAATGTTTGCTACCTGGACCTGGGAGAGTACCTTTTTGCCACCACAACCACTGTGATTTTACTGCTGACTATAATCCCACTTCTCTACACCAAGCTGTATTGGAAACTGAAGTATAGCTATTATGTGTTCCGCTCCTGGTTCGGCCAACACTGGCGCAGgctgagggagaaagaggagcacAGCAAATACGATGCTTTCATCTCCTATAACTCGGCGGACGAGCCCTGGGTACTTGACCAGCTACTTCCAAACCTGGAGGGCAACGGAGCCTCTTTCAGGCTGTGCCTGCACCACCGTGACTTTGAGCTGGGTCGCAACATCGTGGACAACATCGTCTCCGCCGTGTACAGCAGCCGCAAGACCATCTGCGTGGTTAGTAGGCACTTCCTGTGCAGCGAGTGGTGTTCCCTGGAGATCCAGCTGGCCAGCTACAGGCTCTTCCATGAGCTCCGGGATGTGCTCCTGCTCATCTTCCTGGAACCCATCCCTGAAAGGCAGCTCTCAGCTTACCACCGTATGAGAAAGGTCATGTTGAAGAAGACCTACCTGCAGTGGCCGGGGTCAGACTGCACAGACCCGGTCAAGGCTCAGGAACTGTTTTGGAACCATCTGAGGAGGGCGCTGAGGAGTGGGAGCAGCAggtttgaagaggaggatgaggggagggaggaatacTTCAATCAGCCACCGACGGATGATGATAACTATTACTTAATGCCTTAAGGAAATGGTAATAGGACACATTTTGCCCTAGCAGCAGTCTGATTCCTGGATATGAAACAAAGGTCAATGTAGTAAAAGTACAGAAATtatgcacacagagacacatacaaagacagagagaggaactgaATCTCTTGTAAATGTGCCCTCTGTGCCATGATTTCTACTTGCTTGAAATCCAGCATCGTCTATGCTTTGATTTAGTGCTTTAATAACCTTAATTCATTTGGGGGGGGCGGGGGTTTTGTAACTTGCTCATGGACAAAAAGAACATTTTTTAATCTTGTTCTGTACTAAATAATATTGTGATACTGTTTGTACATTTAAAAGATGAAATGGCAATGGAAATATGATCAGACATACCCTGACAAATCATGTTGCAAAGTTAAAGAATATTAAAATTAAGTATACATCTTGTTGGTAAATATCACTGTCTCAAATCAGCAAGACACCGACAGATGAGACCTATTACTTAAGGAAAGGGTTAGAGGACACGCGTTGCCCTGGCAGAAGCCTGTTTTTCCAAGACATTAAACAAAGTTCAATGTAGTAAAAGTACTGCAAttatgcacacccacacacatagaaacagagagaggaactgaATCTCTTGTAAAAGTGCCCTCCGTGCCATGACTCTgtccagtaccctctgtatatagcctcgctattgttattttactgctgctctttaattatttgttacttttattttaaatgttttacttatcacttatttttttcttaaaactgcattgttggttaagggcttgtaaataaacatttcactgtaaggttagAGGACACACTTCGCCCTGGCAGCAGCCTGTTTCCAGGACATTAAACAAAGTTCGATGTAGTAAAAATACTGAAATTAtgcacacctgttgtattcggcgcatgtgacaaataacattttattttatgttcTACTTTCTTGAAATCCAGCATTGTTTATGCTTTGATTGACTGCTATTAGCTAAAGCCATAATTTGTTTTCTTTTGTAATTTGCTCTAATGGAAAAAATGAACTTAATCCTGTTGTGATCAGTACATAATAAtattgtaatactgtatgtacatttaAAAGATGCAAAATGGAAATGGTAAATAAGATGAGACGTACCTTGACAAATCATGTTGCAAAGTGAATTTAAATATTCTATAAGTATACTTCTTGTTGTAAAATATCACTGTCTCAATCAGTAGTACACAAACTAAAACAAGTAAATGAATGATCTATTATTAGATTTTAATATAAgatacagtgtgtacagtatttTACTTACAGGTTCATTTTATTCAGTCCATCTTACAGGGGGAGAATTGTATACCCCTCATGTCCTCGCTCCTTCTCAAAACCAATTGGAGAAAAAGGTCAGAGGGGAgtgacctctggctttctcatccaatgggttttgagaaggagacaaggCGAGGAATATGCAATTGGGATCTACCCATGGACAGCAGACAATCCTCTGCAGAATGCATTCATGCTAATTCATGTCTTTTATAATCTGTGCTAAAGCATTCTGCTTGTCAAAAATAATAAAGTATACTTTAAGTAGGCCCACTggccacaaaaaaaacacaagggCCAGATTCTTGGATATTTTGTACTGCCATAGTTGACTTGTCCACTGTAGCTGTCTGTAAACAACATACTGCATAAGTTCTGCAATTCATTTTCTCTTATAGTGCTTCTGTATGTTTTTGCATGCAAATGTTTCAATTAGAAGTATTCATGCAATACAAAATAATTCTGCTGCTGTTACCTTTCTACAG

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591169.2 True 5047 mRNA 0.42 2 12864942 12875688

Neighbor

gene id symbol gene type direction distance location
LOC110509927 LOC106578751 coding downstream 4353 12856694 ~ 12860589 (-)
LOC110509869 NA coding downstream 100961 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 106762 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 111156 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 119255 12735753 ~ 12745687 (-)
LOC110503616 LOC106605556 coding upstream 5197 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 49766 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 463505 13339193 ~ 13341845 (-)
LOC110510138 trp-ii coding upstream 470421 13346109 ~ 13347872 (-)
LOC110503661 trp-i coding upstream 484194 13359882 ~ 13360962 (-)
G225391 NA non-coding downstream 17247 12847436 ~ 12847695 (-)
G225370 NA non-coding downstream 21043 12841311 ~ 12843899 (-)
G225368 NA non-coding downstream 41813 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding downstream 43867 12814937 ~ 12821075 (-)
G225369 LOC106578676 non-coding downstream 44807 12813999 ~ 12820135 (-)
G226019 NA non-coding upstream 35782 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 81755 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 95413 12971101 ~ 12971823 (-)
G226065 LOC106605724 non-coding upstream 96870 12972558 ~ 12985792 (-)
G226106 LOC106578882 non-coding upstream 158885 13034573 ~ 13036569 (-)
G225171 LOC106605713 other downstream 391882 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 407151 12454388 ~ 12457791 (-)
G225099 NA other downstream 523976 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 783709 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 848841 12014926 ~ 12016101 (-)
G226124 NA other upstream 191185 13066873 ~ 13067357 (-)
G226187 NA other upstream 301490 13177178 ~ 13180272 (-)
G226224 NA other upstream 348196 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 468386 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1050986 13909746 ~ 13927861 (-)

Expression


Co-expression Network