LOC110510306 (LOC106578229)


Basic Information

Item Value
gene id LOC110510306
gene name LOC106578229
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13906345 ~ 13909374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591709.2
CGGCgaagatgataacagtagtaggcTGGCGTAAATGTGGCTGGTGTAAGAACACAACAGTCTACAACAGATATCCCCTTCATTCTCGATCGGAAAACGGTTCGGTTACGTACCGCAAATTTCTTTCTCTTGCTACGAGCAATGTAGGCTGATGAAACGGAACAGACGGCAAAAAAATCGTAAAACTACACATTGTTCTACATGGACAAAGACAAGTTCGCTGTGAGCCATGACCCATGCTCCTGGTTGGAGATGCACCAGTTCATTGGAGACCTGATGGTGTCTGGGGGGGCTCTGGGGCTTAAAGACACCCCACCAGCAGGCCCAGGCTCAGCCCAGCCCAGACAGGTCCAGGCCCAGgcagagagaattagagaggccAGAGACATCAGTGGACAAACTCAGCACCATACCTGCACTTGCCCTGGCTGCCCCTactcttcctcatcttcctccttccAGACCATAAAGCCCAACAGCACCTACAGCCCAGAGCTCAGTCAGCCCCAGAGTCAGGCCAAGGAGACCAGCACCCAGAGCCCCAGCCCAGCCCCTACCACTCTCACTACCCAGGGTACTTCTTCACCAAGTCCCCTGCCCCAAATCCCCACCTTCCCTTGTTTCTGCTGCCGCCGGGGCTTCCAGACCTGCACCCAGCTACAGCACCACCAACAGGGGGCAGCAGACTTTCCCTTCTCCCAGACACAcacctactaccaccaccactgccCACTTACCACCTGCCTGCCCCACCACCACGCCCACCCTGGCCTGTCACCTGGCACCTTCCCCTGCCTGTCCTGCCAGCATTCCTTCCCCTCCTGCTCCCAGCTCTTCCGCGAACATCAGGGCCACACACCCCCCCAGAACCATGTTGGAGGGGTGACCATAGTGTCCCCTACCCTACACCCATGCATGCACTGTCCAGCCTCCTTCCCCCGACCCTCTCAGCTGCTACAGCACCAGCGCACCCAGCACGCTCACAAGGCTGGCGGCTTCCTGTGCACTGAGTGCGGGCGTGCCTTTAACTCCCACTCCAACCTCCGCATCCACCTCAACGTACACACCGGCGCCCGACCCTACTCATGCCCTGACTGCGGCAAGAATTTCAGCCAGTCGGGAGCGTTGAAGATCCACCGTCGCATCCACACTGGGGAGAGACCCTATGCCTGCACCTACTGTGGGAGGGGCTTCCCCCACCTGGCCGGGGTCCGGGCCCACCAAAGGACCCACACAGGTGAGAAGCCCTACCGCTGCACCCAGTGTGAGAAGTGCTTCACCCAGTCGGGGGCACTGAAGATCCACACAAGGATCCACACCGGGGAACGGCCGTTTGTGTGCAGCCTCTGTGGGAAGGGCTTCTCCAACCGCTCCGGCATCCGCTTCCACCAGCGCACTGTCCATGGGATGGTGTCGGATatgggagggggtggaggagccGGTGGGTCCCATAGGGGGAGACAGAGTCTAGGCAGCTCAGCTGCTGTGGGACGCCCCAGTGCCAATCCAAACAGGTTATGCAACAACCCCCATACTGATGTGACCTCCAGCATTACTCCTGCCCCGACAAAAATCCTTTCCCCTGGGTCTCTCCTTGCTCCTCCAGGGTCAGGTCTGACTGTAACCTCAGACAAAGAGCTCCAGTTCCAGTCTAGCAGTGTGAAGATCCCCTCCAGGAGAGCAGAACCGGGCAGTAGCAGTGAAGGAAGGTCTCAGCTGTACACCTGTGAGGACTGTGGTCTGCTTTTTGGGGACGCTCCCTCCAGAAACCGACACcaaactgtagtgcactactctacaGAAGGGGTAGACGAGGAGGGCCTGGGGGACACTgggggggaggggtgagagagatggtagaTGGAAGCTTGATGCAGTACATCGTTGGATCAAAGGCTAagggagaggtgagaagaggcAGAAAGCTTGAGACTCATCGAGGGAATAAAACATGTAAATGCATGGTGGTGAAGGGAGGTGAGAAGAAAGTTAATTCCACAGTGAACAATAAACTCTCTCTATCAATGGGCTATATTACTTATTTGAGATTGAATTTCCACTTTAAAAGATGCACTAATTTTCACATTTTGGGAGTCCAGTTTTCTGTTTGTCAAAAAGCCAAGTACCATGATTAGGCTACTAAAGATGATTATTTGAGAGCTTTTGATtatttttgtgtttattttaCTGGTTTGGCAAAATCCACAGATAGCATCATCTCAAATGTATGACACTGTAAGACAttgtcccatagggcagcgcacaattggcccagtgtcgtccgggttagggggggggggtttggtcggggtaggctgtcattgtaaataaaaatgtgttcttaactgacttgcctagttaaataaaaaataagtgaAGAGTTGTATTTAGCATCATTATGTAATTTATATTTTGTAATAATAGAATCTGATATTGTAGGCCTGTATAAACTTGTGTATATCAGTTtatctatctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttt

Function

NR:

description
zinc finger protein 383-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591709.2 True 2569 mRNA 0.53 3 13906345 13909374

Neighbor

gene id symbol gene type direction distance location
LOC110510354 LOC106578237 coding downstream 3834 13886548 ~ 13902511 (-)
LOC110510240 LOC106577561 coding downstream 22786 13743533 ~ 13883559 (-)
rs19 LOC100689943 coding downstream 182453 13718244 ~ 13723892 (-)
LOC110510231 LOC106577531 coding downstream 227670 13558493 ~ 13678675 (-)
LOC110510190 LOC106577499 coding downstream 424404 13480119 ~ 13481941 (-)
wu:fe05a04 LOC106578221 coding upstream 372 13909746 ~ 13927861 (-)
LOC110510327 LOC106578208 coding upstream 22473 13931847 ~ 13940558 (-)
LOC110510265 LOC106578191 coding upstream 31330 13940704 ~ 13950382 (-)
si:ch211-261d7.6 LOC106578166 coding upstream 54475 13963849 ~ 13980927 (-)
zgc:66448 LOC106605594 coding upstream 77268 13986642 ~ 13992932 (-)
G226504 NA non-coding downstream 1502 13828830 ~ 13904843 (-)
G226571 NA non-coding downstream 5602 13900363 ~ 13900743 (-)
G226524 NA non-coding downstream 47506 13847444 ~ 13858839 (-)
G226484 NA non-coding downstream 94993 13748139 ~ 13811352 (-)
G226492 NA non-coding downstream 121586 13780831 ~ 13784759 (-)
G226593 NA non-coding upstream 71963 13981337 ~ 13981641 (-)
G226594 NA non-coding upstream 72516 13981890 ~ 13982242 (-)
G226596 NA non-coding upstream 74112 13983486 ~ 13983797 (-)
G226597 NA non-coding upstream 74503 13983877 ~ 13984102 (-)
G226605 NA non-coding upstream 124247 14033621 ~ 14033969 (-)
G226294 LOC100136012 other downstream 561970 13344074 ~ 13344375 (-)
G226224 NA other downstream 681830 13223884 ~ 13224515 (-)
G226187 NA other downstream 726073 13177178 ~ 13180272 (-)
G226124 NA other downstream 838988 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1433285 12472299 ~ 12473060 (-)
LOC110538195 LOC106578103 other upstream 90362 13995196 ~ 14023153 (-)
G227060 NA other upstream 519419 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 613806 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 689415 14598789 ~ 14638314 (-)

Expression


Co-expression Network