upk1a (LOC106605667)


Basic Information

Item Value
gene id upk1a
gene name LOC106605667
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 15628437 ~ 15631725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592768.2
CATGGAAGTAGACTACATTTAACAGAAAGCTGAGACAGGTGCTGAGCACAGCAGGCACAACAGAACGACAGCTGTTTGGTCAACAGAAAAAGATGCTCAGGGCCTGACATCACTGCAGGGGAGGAGCAGTGGGTTTAGAAGGAGCTGACAGAAGGACCGCTACTATGGCTGATGGAAAGGGATTCACCTGTCTTATGGTCATTCTCATCCTGGGGAATATATTTGGAGCTGCAGCAGGTCTTGCCCTTTGCGCTCTGGCCATCTGGGTTGCAGTAGATCAATTCAAGCTCTACCCTATATCTGGTGTGTCGGGGAAAGATGACATCTTTGCCGGGGCCTGGATTGCCATTTTCACAGGCTTTGCCTTCTTCTGCATGTGTGTCTTTGGTATCTTGGCTGCTGCGAAGAAGAGCCGTGCCTTAATGCTAACATATCTGATCCTGATGTTGATCATCTACATATTTGAGTGTGCCTCGTGTATCACTGCAGTCACCCACAGAGACTATCTGGTTGGAAACAGTAATCTGGTGAAGAAGCAGATGCTGAAGTACTATGCAGCCGACAGTGACTCTGGCAGTCGGATCACACTGACATGGAACAAAGTGATGAAAGAGGTGGAGTGTTGTGGAACGGATGGCCCAGTGGACTGGATAGAGTACAACTCCACCTTCAGGGAGAAGTTTGGTACAGACTACCCCTGGCCCACCCACTGCTGCAAGAGGAAGAACAACTACGAGGTGGTGAATGTGGAGGCCTGCAAGAATGGCCAGAACACCACCATGTTCACTAAGGGCTGCTTCAACCACATTGAGTCTGTGTTCAGTCGATATACATGGGCTATCAGCTGGTATGGTTTCGCTGTGCTAATGTTTATGTTCTGGCTGTTGATCCTGGCCATGGTGTACTACCTGATGCTGTGAGAAGTCTGGAGGTGATGTCTCTAACCATGTTTTATACTTTCTGCTGAAGCAACACCAACCCTCACTTCAGCAACTACCTCATTTCTTAAATAACAAATGACTGTGGGAATGATAACAGAAAAGTTTTCTGATATATAGAGAATGAACACTGTGTAGGGATTcaaatgtgtgtatatgtgtgtgtgtgtgtgtgtgtatatgtgtatatgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtg

Function

NR:

description
uroplakin-1a-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17347 UPK1; uroplakin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592768.2 True 1161 mRNA 0.47 8 15628437 15631725

Neighbor

gene id symbol gene type direction distance location
LOC110512327 LOC106578554 coding downstream 88760 15536363 ~ 15539677 (-)
LOC110512370 NA coding downstream 102629 15516199 ~ 15525808 (-)
LOC110519926 LOC106577653 coding downstream 158425 15440734 ~ 15470012 (-)
si:dkey-65b12.6 LOC106577653 coding downstream 222081 15397673 ~ 15406356 (-)
LOC110519925 LOC106578249 coding downstream 397950 15216991 ~ 15230487 (-)
LOC118946067 NA coding upstream 52247 15683972 ~ 15685054 (-)
LOC110503794 LOC106578507 coding upstream 169634 15801359 ~ 15817153 (-)
LOC110503786 telt coding upstream 192353 15824078 ~ 15830026 (-)
LOC110512120 LOC106605647 coding upstream 221506 15853231 ~ 15861569 (-)
LOC110503781 LOC106605653 coding upstream 269173 15900898 ~ 15912729 (-)
G228051 NA non-coding downstream 60492 15543333 ~ 15567945 (-)
G228070 NA non-coding downstream 61406 15566169 ~ 15567031 (-)
G228047 NA non-coding downstream 88219 15540013 ~ 15540218 (-)
G227880 NA non-coding downstream 154553 15473639 ~ 15473884 (-)
G228148 NA non-coding upstream 82596 15714321 ~ 15714521 (-)
G228150 NA non-coding upstream 87097 15718822 ~ 15719083 (-)
G228155 NA non-coding upstream 92314 15724039 ~ 15724275 (-)
G228158 NA non-coding upstream 95374 15727099 ~ 15727343 (-)
G228159 NA non-coding upstream 96186 15727911 ~ 15728129 (-)
G228094 NA other downstream 26949 15601015 ~ 15601488 (-)
LOC110503689 tm149 other downstream 991727 14598789 ~ 14638314 (-)
psenen LOC106577931 other downstream 1103583 14519197 ~ 14524902 (-)
G227060 NA other downstream 1153271 14428793 ~ 14475166 (-)
G228098 fbrl other upstream 74509 15706234 ~ 15708265 (-)
G228191 LOC106578455 other upstream 155897 15762029 ~ 15791401 (-)
G229373 LOC100194703 other upstream 1207664 16839389 ~ 16839839 (-)
G229380 LOC106605502 other upstream 1218247 16849972 ~ 16850199 (-)
G229707 NA other upstream 1413300 17043792 ~ 17048344 (-)

Expression


Co-expression Network