LOC100135920 (LOC100135920)


Basic Information

Item Value
gene id LOC100135920
gene name LOC100135920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45105779 ~ 45108587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124283.2
ACCTATCAGTGTAGAGCCTGATTTTAAACACAGGCAACTCTGTAGTCCGCCTTCACGCAAATACGTATTCacttttggattttttttttatagcaaACTCCGCACCTTAGATAATGAATCTGATGCAGGTTCTAATTTATCTGAGTTTTATGGTTGCTTTCGGTCCAATGGGTCTTGGTGATCAAACGGCGCACCACCAATCCCCGGCCACGGATGACGGTGAACAGTGCTCAACATGCGAGGTCCGACAGCAGATCAAAAACATGAGATTACACGCCATCAAGTCACAAATTCTTAGTAAACTGCGACTCAAGCACGCGCCCAATATTAGCCGAGATGTTGTCAAGCAGCTCTTGCCCAAGGCACCACCTTTGCAGAAACTTCTTGACCAGTATGATGTACTTGGAGATGACAATAAGGATGGACTTATGGAAGAAGATGATGAACATGCCATCACAGAAACAATCATGACAATGGCCACTGAACCCGAATCCATCGTCCAAGTCGATGGGAAACCCAAGTGTTGCTTTTTCTCCTTCAATTCGAAGATTCAGGCGAACCGCATAGTTCGGGCACAGCTATGGGTGCACCTTCAGCCACCTGACGAAGTCACCACCGTGTTCCTGCAAATCTCCCGCCTGATCCCTGTCACGGACGGGGGCAGGAACATACAGATCCGGTCTCTAAAGATCGACGTGAATGCAGGAGTCAGCTCTTGGCAGAGTATCGACGTGAAACAAGTGTTGTCGGTGTGGCTGCGGCAACCGGACACGAATTGGGGGATCGAGATTAATGCGTTGGACTCAAAGGGAAATGATCTGGCCGTTACCTCAACTGAAGCCGGAGAAGGACTGCAACCCTTCATGGAGGTGAAGATTTCGGAGGGCCCGAAGCGCTCCAGGAGAGATTCGGGCCTGGACTGTGATGAGAACTCCCCCGAGTCCCGCTGCTGCCGGTACCCCCTCACAGTGGACTTTGAAGACTTTGGCTGGGACTGGATTATTGCCCCCAAGCGCTACAAGGCCAACTACTGCTCTGGTGAGTGCGAGTACATGCACCTGCAGAAGTACCCCCACACCCACCTGGTGAACAAGGCTAACCCCCGGGGCACCGCAGGGCCCTGCTGCACCCCCACCAAGATGTCCCCGATCAACATGCTCTACTTCAACCGCAAAGAGCAGATCATCTACGGCAAGATCCCATCCATGGTGGTGGACCGCTGCGGCTGCTCGTGAGCGAGAGTTCTGCTGGGGAAGGGGAGGGGCTTAGCCAGGGTCTCCACCCTGGACTTTGGGACAGATCCATCCATCACTACCAGTGCTTTCTGCAGAACACAGTGCAATAGAGCCACAATAGCGGCTAAAGAAACACCTGTCCATTCGCTGAGCAGGCTTCAACCACGGACATGTCT

Function

NR:

description
myostatin 2 precursor

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05497 MSTN, GDF8; growth differentiation factor 8

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124283.2 True 1411 mRNA 0.52 3 45105779 45108587

Neighbor

gene id symbol gene type direction distance location
hibch hibch coding upstream 13704 45041037 ~ 45092075 (+)
LOC110505238 NA coding upstream 70433 45028832 ~ 45035346 (+)
LOC110520010 LOC106586134 coding upstream 95155 44989108 ~ 45010624 (+)
LOC110520005 LOC106586127 coding upstream 174895 44904034 ~ 44930884 (+)
cd18 cd18 coding upstream 202103 44878660 ~ 44903676 (+)
LOC110520014 ormdl1 coding downstream 83133 45191720 ~ 45209591 (+)
LOC110520018 LOC106586140 coding downstream 171350 45279937 ~ 45292634 (+)
glsb LOC106586143 coding downstream 231742 45340329 ~ 45399501 (+)
LOC118956876 NA coding downstream 385722 45494309 ~ 45495980 (+)
LOC110520024 cxcr4 coding downstream 391551 45500138 ~ 45502139 (+)
G262735 cssa21h2orf88 non-coding upstream 3341 45100039 ~ 45102438 (+)
G262313 NA non-coding upstream 146604 44958687 ~ 44959175 (+)
G262259 NA non-coding upstream 213720 44851379 ~ 44892059 (+)
G262035 NA non-coding upstream 589295 44516200 ~ 44516484 (+)
G262028 NA non-coding upstream 597688 44507752 ~ 44508091 (+)
G262807 NA non-coding downstream 89763 45198350 ~ 45198602 (+)
G262814 NA non-coding downstream 118586 45227173 ~ 45227384 (+)
G262820 NA non-coding downstream 134263 45242850 ~ 45243091 (+)
G262827 NA non-coding downstream 145610 45254197 ~ 45254448 (+)
G262875 NA non-coding downstream 226540 45335127 ~ 45335366 (+)
G262037 NA other upstream 580371 44520419 ~ 44525408 (+)
G261749 NA other upstream 853228 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 4653599 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5437691 39658753 ~ 39668297 (+)
G254816 NA other upstream 6261223 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 730334 45838921 ~ 45839480 (+)
G263710 NA other downstream 825532 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 966897 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 1075547 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1722421 46801058 ~ 46832288 (+)

Expression


Co-expression Network