LOC110520046 (LOC106586167)


Basic Information

Item Value
gene id LOC110520046
gene name LOC106586167
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46801058 ~ 46832288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597024.2
TGTATAAGGAACGTGCAGTGCGCAGGAGCCGTGAAGGGGAAAATCGAGAGAAAGAACGAAACAGCTGCTGTTGGATTCTTAATACCTGCGTCCATAAGAACATCACAAGAAAAATCCCACCAGAAGAGGAAAAGGGGAAGCATGAAATACAGCTTGCAGGCATCATCGGTAAGGGGAACCACATAAGTATGAGCGGACAGTAAATTGTTCCCCGAATCCATAATTTTCCATCATATTCCACTGTCATAGGACTGAATGCAGATCCTATGTGCGCCCGCAGTAGCACAAAGCGGAGGTTTGGGAACCAAATTGTGTCCAACACCAACGCTGAAATCGGATGTACAGTACGTATTGTGCCGTTTCATATTGACCACGGTTTCTAATCACATTTACCAACGATTCATTAATTACCTACCGGATCCAGATTGCTTGATGGGGCGTCGAAACTTTTCAACGAAGCGTTTCAACTTTTAACCCAAGGTGTGGACTTCACGGAGGAGGAAAGTGTTGAACCAACCTGCATTGGTCTAACCTGGGAGGGCGATAAGTAATCAGCAGCGCCTCACCAAAGAATAATCTGTTCAAAAACCTGAACTGCAACGGACGCGTTTGGATAGCAGATGATCCTGTGCGTAATTGTTTTATAGCGGACTCCTTTTCGGGTGAAGAGCTCTTTGTTGTGATTGAAGTGACATTAGCCCTCTCTTATTTTCATGGCTTTGGAGTGCAGTAGTAGGAACAGTATGTGGAGCGAGGGGACAGTGCATGATTAGTTCGTTACAGAACGCACTTTCCTCGCCTTATTTCCAGTTCCAAGATATTGGACACAACACAAGGACAATTGCTGCAACTACAACGAAGTCCTGTACAGAAATAGACTTTACATTAAATCCTTCAGATTATTTCTCTCGCTGCTGCCATCGTAGTATGTCTGCACTCCGAAAGAAATTTGGGGACGATTATCAGGTAGTGACCACCTCATCCAGCGGGTCTGGATTCAACCAGCCGgcaccagagaagaagaagaagaggcaaCGCTTTGTGGACAAGAACGGGCGATGTAACGTCCAGCATGGAAACCTGGGTGGTGAAACCAGTAGATATCTTTCCGATTTATTCACCACACTGGTCGATTTGAAATGGCGCTGGAATTTATTCATCTTCATCCTTACATACACGGTGGCATGGCTCTTCATGGCCTTCATGTGGTGGATCATAGCCTACATAAGAGGAGACCTCCATCGAGCCCACGATGACAAGTATACGCCATGCGTTGCCAATGTCTACAACTTTCCCTCCGCGTTTTTATTCTTCATAGAAACGGAAGCCACAATAGGATATGGCTATAGGTATATCACGGACAAATGTCCCGAGGGGATCATTCTCTTTCTTTTCCAGTCAATCCTGGGATCAATTGTTGATGCTTTTTTGATTGGCTGCATGTTCATTAAGATGTCCCAGCCCAAAAAAAGGGCAGAGACTTTGATGTTCAGTGAACATGCAGCTATTTCGATGCGAGATGGAAAACTAACTCTCATGTTCAGAGTCGGCAACCTGCGTAATAGCCATATGGTCTCCGCACAGATccgctgcaaattgctgaaaTCTCGTCAGACGCCCGAAGGCGAGTTTCTTCCTCTGGATCAGTTGGAATTGGACGTGGGCTTCAGTACCGGGGCGGACCAGCTCTTCCTGGTCTCACCACTCACAATCTGCCATGTGATCGACACCAAAAGCCCATTCTACGAACTCTCCCAGAGATCCATGCAAACAGAGCAGTTTGAAATTGTGGTCATATTGGAAGGAATAGTGGAAACCACTGGGATGACTTGCCAAGCGAGGACCTCTTACACTGAGGACGAGGTTCTATGGGGACATCGTTTCTTCCCGGTCATCTCCCTGGAGGAGGGGTTCTTCAAGGTGGACTACTCTCAGTTTCACGCCACGTTTGAGGTCAACACTCCCCCGTACAGCGTGAAGGAGCAGGAGGAAAACCTGCTCATGTCCTCTCCACTCATGGCCCCGTCCCTGTGCAACAGCGGCGAGGGAGGGAAGAACAGCTCCATGGACTGCCTGGAGAACCTGGAGGACAAGGAGAGCACCACCACCAAGCTGCCATCCAAGCTGCAGAAGATGCAAGGGGGCGGCTGCGGACGGGACGGGCTGCCCATGCCTAGGAAGCTGCTGAGAATGAGCTCCACCACTTCAGAGATGATCTACCCCGGGAGCATGGGGGAGCTGCCAATGAAGCTGCAGCGCATCAGCTCCGTCCCAGGCGTCTCCGATGAGAAACAGATGAGCAAGATGGTCTCCAAGATCAGCTCCGATCCCATCAGCCAATCCGTGGCAGACTTGCCCCCCAAGCTGCTAAGGatgcaggggggagggggggtaggggGCCGAATGGACGGACACCTGCCCCCGAAACTCAGAAAGATGAATTCCGACCGCTTCACGTAGAATGGGCAACCCGTTTTAACTTATCACACCCCATACCCTTATTCCAACCCTTGTATTATTTCAAATTTATTAAAAGACATGATTCTTATACTCAAGAAAATGTAGTGTATATATTCGTACAGATATACCTTatataaaggggggggggggggggggggggggggtgatggaaTACAGAACATTTGTTCCTGGATGGAAGCATACGTGCTATGATGAAAGACCTCTGATTTCTTCAGGACAATGTACGATTAGCACAATCTGGCATGTCCAATACACTAACCGCATGCAAAACAGATTCTCTCTAATTTCTGGCATGACATTTATTGCTGTATTATTTTACAGAGATGATTTGAACAGTGACATTACTTACAATGGGTCCGAACATTTGCACAACGCCACGTGGTTTACAAAAATGGAGAACCTACATTACATGGGTCTAATTTACGGCGGAGAAGGCtgcatacatttgatttgagttggcCGCTTttgttgtttactgtaaaattgtGTGGCAACGCTCTGTTAAATGCATGCTACTATTATTATTGTCTTAGCTAGACAAAGGTAATAGACACAGATGTTTAGCCTTTACTATATTACCTTGTTTCCATTTCCACGTTTGTTCACGGCTGTATTTTTGGTATTTCATGTATAGGAGGATGTCTTACCATGTGAGATTTTTACACCTTCCTTAGTTCAGCAAGCGTACTGTATGTTGCTGGGCAATGCAATCTATATTTGCAAATGCATGGTCCACATCATATGACAGATTGGAACTGGGCACAATCTTATTAAGCAACGTGAGGTTACTTTTCAAGGTAACACTTATGTTGGAAGGGCCAATACTACCGCCTTATAAGCACAACATAACCATTACACAACACACAGTACACTATTTAGGGGTACTGTTCATGGCAGGAAGCATTTATGGCGTTTGGACAAATGTCCTGAGCAGTACTGTACAATGCCTCTTTGACATGGAAGTTAAAACAACTGAACACACGTGTTCGTGTATGCCTTCTCAAACAGTCGTTTTGAAGTTCAAATTATTATTTATTCGACTTTTCATTGAAAACGTGCACCAAAATTTCGAGTTAACTGTCACCGCATAGATATAGATTTAGAGGTGGACCTATATTTAGGAAAAAGTAACCACCTTTGTCTTAAGAGTCTATTATGCTCTCTCTTTAACTAAAGCAATAATGTTATTCTTAATGACTATAATCTTTATATACCCACAGGGTCTGCAGCAGCCCCATTACCAGTATATTTACAGAATCAATGCCATGGAACCTGGTCCTACTAAAACCACCAATGACGTTGTATGATACTCAAACTCTTCAGGAATAAAGATCTAAGAGGCAATTGTTGACACGTTGATTTAATGGGACACGGGTAGCTTGCTTTTTGCACTGTCactgtcaaataaataaaaaggctTGCATAGAAGACCC
>TU300303
ACAGAACATTTGTTCCTGGATGGAAGCATACGTGCTATGATGAAAGACCTCTGATTTCTTCAGGACAATGTACGATTAGCACAATCTGGCATGTCCAATACACTAACCGCATGCAAAACAGATTCTCTCTAATTTCTGGCATGACATTTATTGCTGTATTATTTTACAGAGATGATTTGAACAGTGACATTACTTACAATGGGTCCGAACATTTGCACAACGCCACGTGGTTTACAAAAATGGAGAACCTACATTACATGGGTCTAATTTACGGCGGAGAAGGCtgcatacatttgatttgagttggcCGCTTttgttgtttactgtaaaattgtGTGGCAACGCTCTGTTAAATGCATGCTACTATTATTATTGTCTTAGCTAGACAAAGGTAATAGACACAGATGTTTAGCCTTTACTATATTACCTTGTTTCCATTTCCACGTTTGTTCACGGCTGTATTTTTGGTATTTCATGTATAGGAGGATGTCTTACCATGTGAGATTTTTACACCTTCCTTAGTTCAGCAAGCGTACTGTATGTTGCTGGGCAATGCAATCTATATTTGCAAATGCATGGTCCACATCATATGACAGATTGGAACTGGGCACAATCTTATTAAGCAACGTGAGGTTACTTTTCAAGGTAACACTTATGTTGGAAGGGCCAATACTACCGCCTTATAAGCACAACATAACCATTACACAACACACAGTACACTATTTAGGGGTACTGTTCATGGCAGGAAGCATTTATGGCGTTTGGACAAATGTCCTGAGCAGTACTGTACAATGCCTCTTTGACATGGAAGTTAAAACAACTGAACACACGTGTTCGTGTATGCCTTCTCAAACAGTCGTTTTGAAGTTCAAATTATTATTTATTCGACTTTTCATTGAAAACGTGCACCAAAATTTCGAGTTAACTGTCACCGCATAGATATAGATTTAGAGGTGGACCTATATTTAGGAAAAAGTAACCACCTTTGTCTTAAGAGTCTATTATGCTCTCTCTTTAACTAAAGCAATAATGTTATTCTTAATGACTATAATCTTTATATACCCACAGGGTCTGCAGCAGCCCCATTACCAGTATATTTACAGAATCAATGCCATGGAACCTGGTCC
>TU300304
ACAGAACATTTGTTCCTGGATGGAAGCATACGTGCTATGATGAAAGACCTCTGATTTCTTCAGGACAATGTACGATTAGCACAATCTGGCATGTCCAATACACTAACCGCATGCAAAACAGATTCTCTCTAATTTCTGGCATGACATTTATTGCTGTATTATTTTACAGAGATGATTTGAACAGTGACATTACTTACAATGGGTCCGAACATTTGCACAACGCCACGTGGTTTACAAAAATGGAGAACCTACATTACATGGGTCTAATTTACGGCGGAGAAGGCtgcatacatttgatttgagttggcCGCTTttgttgtttactgtaaaattgtGTGGCAACGCTCTGTTAAATGCATGCTACTATTATTATTGTCTTAGCTAGACAAAGGTAATAGACACAGATGTTTAGCCTTTACTATATTACCTTGTTTCCATTTCCACGTTTGTTCACGGCTGTATTTTTGGTATTTCATGTATAGGAGGATGTCTTACCATGTGAGATTTTTACACCTTCCTTAGTTCAGCAAGCGTACTGTATGTTGCTGGGCAATGCAATCTATATTTGCAAATGCATGGTCCACATCATATGACAGATTGGAACTGGGCACAATCTTATTAAGCAACGTGAGGTTACTTTTCAAGGTAACACTTATGTTGGAAGGGCCAATACTACCGCCTTATAAGCACAACATAACCATTACACAACACACAGTACACTATTTAGGGGTACTGTTCATGGCAGGAAGCATTTATGGCGTTTGGACAAATGTCCTGAGCAGTACTGTACAATGCCTCTTTGACATGGAAGTTAAAACAACTGAACACACGTGTTCGTGTATGCCTTCTCAAACAGTCGTTTTGAAGTTCAAATTATTATTTATTCGACTTTTCATTGAAAACGTGCACCAAAATTTCGAGTTAACTGTCACCGCATAGATATAGATTTAGAGGTGGACCTATATTTAGGAAAAAGTAACCACCTTTGTCTTAAGAGTCTATTATGCTCTCTCTTTAACTAAAGCAATAATGTTATTCTTAATGACTATAATCTTTATATACCCACAGGGTCTGCAGCAGCCCCATTACCAGTATATTTACAGAATCAATGCCATGGAACCTGGTCCTACTAAAACCACCAATGACGTTGTATGATACTCAAACTCTTCAGGAATAAAGATCTAAGAGGCAATTGTTGACACGTTGATTTAATGGGACACGGGTAGCTTGCTTTTTG
>TU300305
ACAGAACATTTGTTCCTGGATGGAAGCATACGTGCTATGATGAAAGACCTCTGATTTCTTCAGGACAATGTACGATTAGCACAATCTGGCATGTCCAATACACTAACCGCATGCAAAACAGATTCTCTCTAATTTCTGGCATGACATTTATTGCTGTATTATTTTACAGAGATGATTTGAACAGTGACATTACTTACAATGGGTCCGAACATTTGCACAACGCCACGTGGTTTACAAAAATGGAGAACCTACATTACATGGGTCTAATTTACGGCGGAGAAGGCtgcatacatttgatttgagttggcCGCTTttgttgtttactgtaaaattgtGTGGCAACGCTCTGTTAAATGCATGCTACTATTATTATTGTCTTAGCTAGACAAAGGTAATAGACACAGATGTTTAGCCTTTACTATATTACCTTGTTTCCATTTCCACGTTTGTTCACGGCTGTATTTTTGGTATTTCATGTATAGGAGGATGTCTTACCATGTGAGATTTTTACACCTTCCTTAGTTCAGCAAGCGTACTGTATGTTGCTGGGCAATGCAATCTATATTTGCAAATGCATGGTCCACATCATATGACAGATTGGAACTGGGCACAATCTTATTAAGCAACGTGAGGTTACTTTTCAAGGTAACACTTATGTTGGAAGGGCCAATACTACCGCCTTATAAGCACAACATAACCATTACACAACACACAGTACACTATTTAGGGGTACTGTTCATGGCAGGAAGCATTTATGGCGTTTGGACAAATGTCCTGAGCAGTACTGTACAATGCCTCTTTGACATGGAAGTTAAAACAACTGAACACACGTGTTCGTGTATGCCTTCTCAAACAGTCGTTTTGAAGTTCAAATTATTATTTATTCGACTTTTCATTGAAAACGTGCACCAAAATTTCGAGTTAACTGTCACCGCATAGATATAGATTTAGAGGTGGACCTATATTTAGGAAAAAGTAACCACCTTTGTCTTAAGAGTCTATTATGCTCTCTCTTTAACTAAAGCAATAATGTTATTCTTAATGACTATAATCTTTATATACCCACAGGGTCTGCAGCAGCCCCATTACCAGTATATTTACAGAATCAATGCCATGGAACCTGGTCCTACTAAAACCACCAATGACGTTGTATGATACTCAAACTCTTCAGGAATAAAGATCTAAGAGGCAATTGTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597024.2 False 3914 mRNA 0.45 3 46801058 46832288
TU300303 False 1127 TUCP 0.38 1 46831008 46832134
TU300304 False 1237 TUCP 0.38 1 46831008 46832244
TU300305 True 1197 TUCP 0.38 1 46831008 46832204

Neighbor

gene id symbol gene type direction distance location
LOC110520045 LOC106586166 coding upstream 23666 46724055 ~ 46777392 (+)
LOC110504152 LOC106586162 coding upstream 256763 46458590 ~ 46544295 (+)
LOC110520040 LOC106586160 coding upstream 359257 46341848 ~ 46441801 (+)
LOC118957146 NA coding upstream 757213 46032765 ~ 46043845 (+)
LOC110520034 LOC106586154 coding upstream 790411 46008199 ~ 46010647 (+)
LOC110504153 gpd2 coding downstream 188707 47020995 ~ 47027946 (+)
LOC110520048 LOC106586169 coding downstream 286440 47118728 ~ 47133302 (+)
LOC110520055 cg057 coding downstream 413206 47245494 ~ 47255098 (+)
LOC110520054 LOC106586173 coding downstream 423876 47256164 ~ 47259319 (+)
LOC110520056 LOC106586174 coding downstream 482929 47315217 ~ 47441923 (+)
G264067 NA non-coding upstream 183652 46576728 ~ 46617406 (+)
G263962 NA non-coding upstream 463282 46337038 ~ 46337776 (+)
G263952 NA non-coding upstream 481858 46318948 ~ 46319200 (+)
G263944 NA non-coding upstream 492485 46308356 ~ 46308573 (+)
G263939 NA non-coding upstream 498604 46302235 ~ 46302454 (+)
G264229 NA non-coding downstream 33056 46865344 ~ 46865560 (+)
G264230 NA non-coding downstream 34549 46866837 ~ 46867059 (+)
G264255 NA non-coding downstream 78102 46910390 ~ 46910659 (+)
G264259 NA non-coding downstream 84130 46916418 ~ 46917336 (+)
G264985 NA non-coding downstream 127378 46959666 ~ 46960010 (+)
G263859 LOC107588258 other upstream 616254 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 721633 46075484 ~ 46079425 (+)
G263710 NA other upstream 866640 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 961578 45838921 ~ 45839480 (+)
G262037 NA other upstream 2275650 44520419 ~ 44525408 (+)
G267358 NA other downstream 2678515 49510803 ~ 49512475 (+)
G267381 NA other downstream 2722210 49554498 ~ 49555838 (+)
G267529 NA other downstream 3004329 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 3330013 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 3770014 50601983 ~ 50618761 (+)

Expression


Co-expression Network