LOC110520045 (LOC106586166)


Basic Information

Item Value
gene id LOC110520045
gene name LOC106586166
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46724055 ~ 46777392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974307.1
ATAAAAGGACTATTGCCTCTATAGTTTTCATGGTAGATTGCACCAGAATGTATCGCCTGTCCGTTACCCCGTTATACATTATTCTTTCCGAGAACAGGTGGATACAAAGACATATCATTTTGCGCTGCATAGAATGTTAGAGATTACAGGGGAACTTGTTTAGGCTACAATATATCGGTAGTCTACGTGTCGCGTCGGGGGGACTGCGGTACATCTGAAGACGGACTAGCAAAGACTGTCAAGCAAGGAAGATTGCCAACCAGCAACATCATCGGGACGTAAAATTATGCTCTTCATTCAGATACAGGTTTCCCGTCTGCGGAACATTTGGATTGATAGTTTGATTTACCATTTCAACCATTCAAAAATGATTAGTGAATTACATTAGTGCTGTTAACCCAATGCAACACGTTGCTGGCAAGCGAGAAATCATTGTGCCATTAATTGATTACAATAAGACATATTTTCTtggGATGACATCCCGGTGTGTCTCCCCTCCGTTACCTTGTTTAGTCTCCAGAGTTCCTGCTTTCTGTCAGGGGCCAGCCTGCTGATTCCTCTCTGCCGCCACGTCACGTCACGGGGGGCCGATGCGGCGTTTCGTATACTGTAAGGTGGTGCTGACCACCTCGCTTGTCTGGGTGCTGGTGGATGTCTTCCTGCTGCTCTACTTCAGTGAATGTAACAAATGTGACGACAGGAAGGACCACTCACTGCTGCCTGCTCTCAGAGCAGTCATGTCGCGAGCCCACGAGGGCCCGGGGGAGATGGGGAAAGCGGTGGCTATCGCAAAGGACGAGCAAGAGAAAATGAAGGAGCTCTTTAAGATTAACCAGTTCAATCTGATGGCCAGTGACATGATTGCTCTCAACAGGAGTCTGCCGGACGTGAGACTGGACGGTTGCAAGACGAAGGTGTACGCGGACGATCTCCCCGACACCAGCATAGTGATCGTGTTCCACAACGAGGCGTGGAGCACCCTGCTCCGCACTGTCCACAGTGTCATCAACCGCTCGCCACGGCACCTGCTGCAGGAGATCCTGCTGGTGGACGACGCCAGTGAGAGAGACTTCTTGGGAAAGAAGCTGGAGAACTATGCTCGTACCCTGGAGGTTCCCGTGCGGGTCCTGCGGATGGAGCAGCGAACGGGGCTGATCCGGGCCAGGCTAAGAGGGGCAGCTGCCACACGGGGACAGGTCATCACCTTCCTGGACGCCCACTGTGAATGCACAGTGGGCTGGCTGGAGCCTCTGCTGGCCAGGATCAAAGAGGACCGGAGATCTGTGGTATGTCCTATAATCGATGTGATCAGCGACGAGACGTTTGAATACATGGCGGGCTCAGACATGACCTACGGAGGATTCAACTGGAAGCTGAATTTCCGTTGGTACCCCGTGCCTCAGAGAGAAATGGACAGgcgcaaaggggacaggacattACCACTCAGAACCCCTACTATGGCTGGAGGGTTATTCTCTATTGACCGGACATATTTTGAAGAAATTGGCACGTACGATCCAGGGATGGACATTTGGGGCGGAGAGAACTTGGAGATGTCTTTCAGGATCTGGCAGTGTGGCGGCTCGCTGGAGATTATAACATGTTCCCACGTGGGTCATGTGTTCCGGAAGGCCACCCCATACAGCTTCCCCGGGGGCACAGGCCAAGTCATCAACAAGAACAACAGGCGATTGGCCGAGGTGTGGATGGACGGCTTCAAAGACTTCTTCTACATCATATCACCAGGTGTGGCCCGGGTGGACTATGGAGACGTGTCCTCTCGCAAGGCCCTGCGTGAAGCTCTGCAGTGCAAACCCTTCTCCTGGTACCTGGAGAACATCTACCCCGACTCTCAGATCCCCCGGAGATACTACTCACTTGGTGAAATCAGAAATGTTGAAACAAACCAGTGTGTGGACAACATGGGCAGAAAGGAGAACGAGAAGGTTGGCTTCTTCAACTGCCATGGCATGGGTGGGAATCAGGTGTTCTCGTACACGGCTGATAAGGAGATCCGGACAGATGACCTGTGTCTGGACGTGTCTCGCCCCCATGGCCCTGTGGTCATGCTGAAGTGTCATCAAATGAAGGGGAATCAGATGTTTGCGTATGACGCAGAGAAGCACACGTTCCTCCACATCATCACCCAGTCGTGTCTGACCATCAGCAGGCTGGAGGACGGCACTTGGGGCCCCACGGTGGAGTACTGTAATAGTAGCCCCTTGCAAGCCTGGGTCCTGAGGAACTTCACCCGGCTGGAGGTGTTTAGGAAGCTGTACTACAGCCCCACCGATTACTTTCTGTAGGGGCTGTCTTCCTGCATGGGTCACCGCAGCGGCTGACCCTGCTGCACGTCAACAGTAACCAGTGTCTGGACATGCCTACTGAGGAGGACAAGATGGTGCCCACCCTGAGAGACTGCACAGGCAGCCGCTCCCAGCAGTGGTTCCTCC
>XM_036974308.1
ATAAAAGGACTATTGCCTCTATAGTTTTCATGGTAGATTGCACCAGAATGTATCGCCTGTCCGTTACCCCGTTATACATTATTCTTTCCGAGAACAGGTGGATACAAAGACATATCATTTTGCGCTGCATAGAATGTTAGAGATTACAGGGGAACTTGTTTAGGCTACAATATATCGGTAGTCTACGTGTCGCGTCGGGGGGACTGCGGTACATCTGAAGACGGACTAGCAAAGACTGTCAAGCAAGGAAGATTGCCAACCAGCAACATCATCGGGACGTAAAATTATGCTCTTCATTCAGATACAGGTTTCCCGTCTGCGGAACATTTGGATTGATAGTTTGATTTACCATTTCAACCATTCAAAAATGATTAGTGAATTACATTAGTGCTGTTAACCCAATGCAACACGTTGCTGGCAAGCGAGAAATCATTGTGCCATTAATTGATTACAATAAGACATATTTTCTtggGATGACATCCCGGTGTGTCTCCCCTCCGTTACCTTGTTTAGTCTCCAGAGTTCCTGCTTTCTGTCAGGGGCCAGCCTGCTGATTCCTCTCTGCCGCCACGTCACGTCACGGGGGGCCGATGCGGCGTTTCGTATACTGTAAGGTGGTGCTGACCACCTCGCTTGTCTGGGTGCTGGTGGATGTCTTCCTGCTGCTCTACTTCAGTGAATGTAACAAATGTGACGACAGGAAGGACCACTCACTGCTGCCTGCTCTCAGAGCAGTCATGTCGCGAGCCCACGAGGGCCCGGGGGAGATGGGGAAAGCGGTGGCTATCGCAAAGGACGAGCAAGAGAAAATGAAGGAGCTCTTTAAGATTAACCAGTTCAATCTGATGGCCAGTGACATGATTGCTCTCAACAGGAGTCTGCCGGACGTGAGACTGGACGGTTGCAAGACGAAGGTGTACGCGGACGATCTCCCCGACACCAGCATAGTGATCGTGTTCCACAACGAGGCGTGGAGCACCCTGCTCCGCACTGTCCACAGTGTCATCAACCGCTCGCCACGGCACCTGCTGCAGGAGATCCTGCTGGTGGACGACGCCAGTGAGAGAGACTTCTTGGGAAAGAAGCTGGAGAACTATGCTCGTACCCTGGAGGTTCCCGTGCGGGTCCTGCGGATGGAGCAGCGAACGGGGCTGATCCGGGCCAGGCTAAGAGGGGCAGCTGCCACACGGGGACAGGTCATCACCTTCCTGGACGCCCACTGTGAATGCACAGTGGGCTGGCTGGAGCCTCTGCTGGCCAGGATCAAAGAGGACCGGAGATCTGTGGTATGTCCTATAATCGATGTGATCAGCGACGAGACGTTTGAATACATGGCGGGCTCAGACATGACCTACGGAGGATTCAACTGGAAGCTGAATTTCCGTTGGTACCCCGTGCCTCAGAGAGAAATGGACAGgcgcaaaggggacaggacattACCACTCAGAACCCCTACTATGGCTGGAGGGTTATTCTCTATTGACCGGACATATTTTGAAGAAATTGGCACGTACGATCCAGGGATGGACATTTGGGGCGGAGAGAACTTGGAGATGTCTTTCAGGATCTGGCAGTGTGGCGGCTCGCTGGAGATTATAACATGTTCCCACGTGGGTCATGTGTTCCGGAAGGCCACCCCATACAGCTTCCCCGGGGGCACAGGCCAAGTCATCAACAAGAACAACAGGCGATTGGCCGAGGTGTGGATGGACGGCTTCAAAGACTTCTTCTACATCATATCACCAGGTGTGGCCCGGGTGGACTATGGAGACGTGTCCTCTCGCAAGGCCCTGCGTGAAGCTCTGCAGTGCAAACCCTTCTCCTGGTACCTGGAGAACATCTACCCCGACTCTCAGATCCCCCGGAGATACTACTCACTTGGTGAAATCAGAAATGTTGAAACAAACCAGTGTGTGGACAACATGGGCAGAAAGGAGAACGAGAAGGTTGGCTTCTTCAACTGCCATGGCATGGGTGGGAATCAGGTGTTCTCGTACACGGCTGATAAGGAGATCCGGACAGATGACCTGTGTCTGGACGTGTCTCGCCCCCATGGCCCTGTGGTCATGCTGAAGTGTCATCAAATGAAGGGGAATCAGATGTTTGCGTATGACGCAGAGCGGCTGACCCTGCTGCACGTCAACAGTAACCAGTGTCTGGACATGCCTACTGAGGAGGACAAGATGGTGCCCACCCTGAGAGACTGCACAGGCAGCCGCTCCCAGCAGTGGTTCCTCCGCAACATGACACTGACGCTCTGATCTGACGAGGAGCAGGACCTCCAACTTCACTCACCACCACCCTGGCCAGTTTCGCCCCCACCTGAACCACCGCCCACTTCGCTCCCGCTGGCCACTACCTTTGCCTCGCTCCACcaggtatttttttttaaatcatgcaCACGCTCCTGCCTCCTTCAACACTCGCAGGTGGGGAAGAAGCAGGCAGGTAGCAGcctgtgttttttgtgtgttttttttcccacGGGGCTTCGGAGGCTCGGCAAGGGCGTTATCTGCGATTCCGATCCCCTCATTCAATCAATATTACACACAGTGGCTGGCAAGAGGTTGGCGTGCACACTCTCAGCCAGAAAATATCTGTATGGTTGACTCATATGAACGGGTCTGAGGTGACGTTGACTCACACTTTTACATATGGAGGAAGCTGGAATCAGAGTGACTATCGCACTGACGGTACCGTATATGTCAGATGGCTCTCAAACCTGGTCGGGTGTGCGTTCAGAGGTTCCCGACTTTTGTACAGCAGCAGCACCGATAGCAGGACACCATTTGTACGTCTGTGGGATCTCGCAGACTATGTACTCTGGCTCTGAACACAAGTGTGTGTTTAAAGCTTAGCCCTGAAAAGAGATGATTCTGTTCGGACATTGTACACCCCCCAATTCACATCTATGTTGGAGCCACGTAGTACATCTGAGGGTGAAGGGTAAGGGTTGCTGTTGTTGATGGGTACATATCAAGAGGCTGACAAAACGCAAAACAGAGGTGATACAGAACTCGTGCATGGAGGCATATAGCTGTCAAATCTAATTTACCATTATCCAATTTGCATTACAAATGTAATTTCGGCAGCTTTTTTGCTTCAATGCTCAATGGCATAAAGGTTTGCACTGTCCCTTTTGTAATTACAGGAAATAGATATGTCATGTCATAACACTGTTTCAAAACACAACTGTATATCTGAGGCCAAAGTTACTTGGATTGATACGGTATGCCTTAAGAGAAATAGTCCATTATTGAATGGGTCAAGGAATTTAGAGAAAGGAAAAAATCTTGACAAGCTTTGCCTCAAAGTCAACCCGGAGTAGTTGTCACAGAATGCAGTTGTTTGTTGAAATTGTTTGTACTGCACTGTAGCACGGTCCGCTCCCCAAACATTGGGTTATTGAATGTATCGTTTATTTTGGATACGTCTGTCTACTTGAAGGTTCCCTTATTCTACTTTAGACATTATGTCCATCACTTTCATTAAAATAGTTTACTTATCATTTGCACGGTTCATTATAACATATCATTTGCCCGATCTAAACATAAAGCAAAAATTATCTGTCGACATGAAAAGGTTGTGAGTGCATTTACAATGTCGGTTTGAATATCAAGTTTCTTGTTTATTTAATTAAGCTATTGTGAAGTCTAAAGCTCCCCGAAACATCTCAGCATTAGTGAATCGATCAATATGAACAATGGCAACAGTATAATGAGACTAAACAAAACTCATCGTGTTTTACCACTTTACTGTGCCATTTTGATGGTCAGTCAAACGATGCGTCCTGAATCGTACCCTGTTGTACTATTTTTGAGCAggtctcatagggctctggtctaaaagtagtgctctatataggtaACAGGggaccatttgggatgcatgaaAAAATGTCTTGATTATGATCAAGATTTTTTGAAAACGGATCAACTATGTTTTTCAATGGATTGTCAAACCGGACCCGCTGACATCCATCCGGTGGTGTAAATAAATAACGGCCATCATCATGTTTTCGTCgtcacagtgactgtacatacagaaCCAATTATTTTTCTAAGACGCTGTGAAACTTGAAAGCCCCGTTGAAATGTAGAGCGTGGCATGGTTATGTCATTGAATCCATTGCCCGTGCGCTGTTCAGAAATACCAATGGAACTCTGTTAATGCTTTCTAGGGGGTTTTATGAAATGTGCAATGTGTTTTAGAGGTTCATCAGCAAAAACCCACAAACTACCTAATGGACATTACTGTACTAAAACGGATTCAAACTATCTCGATGCTTGAACACTGTCATATCTATGCCTACTGTTTGTTTGGCATTCAGACTCAAATGAAATGAACTCTGTTTACGTTCATATATATTTATCGTTTAGTTTCACCTAGATTATCTTtaggtgtagggtgaagttgcccctagactcATATCCCCCCACTAATAGTTAAGGTTGGGATTGGGGAagaggaagctgatcctagatctgttccGACagtaggggaaacttcaccccgtAGCTTATCTTGACATGCATGGTACTACAATAGGAATGTACTATAGATTGTGTTTGAATTTTGAACTGTTACCCTGTACATGTATTGGTCTAAGCTGATGTATGTTACCTGTTTgtacatttttgtaaaaaaacacccccaaaaaaagaagaagaaatgaAAAAAAGTTATCTTGATGGAATCTGCCATGTGTTTGATTACTGGGGGATGATACGAACCAATGAAACGGTGAACGACAAATCGAATAAATCTGTTGTTGATTAAACATTTCTGTTGAAACTTttagggcccccccccccccccctgtgtctCCCGTCTCCTCCTTAGCTCtagggatgcgtcccaaatggcatcctgtttTCTATgtgctgcactacttttgaccagggcccatcggGCTCTAGgtccctggtcagaagtagtgctctatagagggaatagggtgccatttgggactcaacctTAATATCTACTAGGAGCCTGGTGGGCGCTTTAACCATGGCTCAATGATACGCTCATTATAGTTGCTGGGTCAGGTCTAGAGTTAGTCTATGGAGAAGGTCCAGTATAAACTGGGTCCGGGTTTCAATCTGATTGCCCTTTGCCGACAATGCGTcctttaaaggcaatgttcccgctttCGCAGAGAccacattcacggtaaacgctgcatataaaaaaatatatatatatgtattttccttctagcactgactttgataataactactttattgagggaaaatgtacttgctaTGGCTGtgtatatgtggttgtctcacccagCTGTCTtgagatgaatgcactaattgtaagttcgctgtggataagagtgtctgataaatgactaaaatgttaatATGTCGGCGCAAACTGAAACGGCCTTTTAAATGGCGCGTTGTCGACAAACCCGCGATCGGATTGAATCTCATgtcaaaatggcttccaataaAGACTCGGTCTAAGGTTGAGGTCTTGACGACAAACGATTTCACACTAATTTGGTTTATAGAGGCCTTACATTACTGGAAAACTGTCTCAAAGCGTATTTGCATAATATTACATGTAATGGCATAACTTAATTGCTTCACTGTATATTTCCCTTTTCCCCACCCACATCAGAGAAtgggagtttttttttaaaataaatatttgtaaaCCTCT

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 13-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974307.1 False 2453 mRNA 0.53 13 46724055 46773948
XM_036974308.1 True 5682 mRNA 0.46 12 46724055 46777392

Neighbor

gene id symbol gene type direction distance location
LOC110504152 LOC106586162 coding upstream 179760 46458590 ~ 46544295 (+)
LOC110520040 LOC106586160 coding upstream 282254 46341848 ~ 46441801 (+)
LOC118957146 NA coding upstream 680210 46032765 ~ 46043845 (+)
LOC110520034 LOC106586154 coding upstream 713408 46008199 ~ 46010647 (+)
LOC110520033 LOC106586153 coding upstream 791033 45903665 ~ 45933022 (+)
LOC110520046 LOC106586167 coding downstream 23666 46801058 ~ 46832288 (+)
LOC110504153 gpd2 coding downstream 243603 47020995 ~ 47027946 (+)
LOC110520048 LOC106586169 coding downstream 341336 47118728 ~ 47133302 (+)
LOC110520055 cg057 coding downstream 468102 47245494 ~ 47255098 (+)
LOC110520054 LOC106586173 coding downstream 478772 47256164 ~ 47259319 (+)
G264067 NA non-coding upstream 106649 46576728 ~ 46617406 (+)
G263962 NA non-coding upstream 386279 46337038 ~ 46337776 (+)
G263952 NA non-coding upstream 404855 46318948 ~ 46319200 (+)
G263944 NA non-coding upstream 415482 46308356 ~ 46308573 (+)
G263939 NA non-coding upstream 421601 46302235 ~ 46302454 (+)
G264229 NA non-coding downstream 87952 46865344 ~ 46865560 (+)
G264230 NA non-coding downstream 89445 46866837 ~ 46867059 (+)
G264255 NA non-coding downstream 132998 46910390 ~ 46910659 (+)
G264259 NA non-coding downstream 139026 46916418 ~ 46917336 (+)
G264985 NA non-coding downstream 182274 46959666 ~ 46960010 (+)
G263859 LOC107588258 other upstream 539251 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 644630 46075484 ~ 46079425 (+)
G263710 NA other upstream 789637 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 884575 45838921 ~ 45839480 (+)
G262037 NA other upstream 2198647 44520419 ~ 44525408 (+)
G267358 NA other downstream 2733411 49510803 ~ 49512475 (+)
G267381 NA other downstream 2777106 49554498 ~ 49555838 (+)
G267529 NA other downstream 3059225 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 3384909 50162278 ~ 50184327 (+)

Expression


Co-expression Network