LOC110520048 (LOC106586169)


Basic Information

Item Value
gene id LOC110520048
gene name LOC106586169
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47118728 ~ 47133302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597026.2
GACAGGCCACATCCACTTTCACGCCACCTTCGACGTACCCTAAAACGGTTTGCATAAAATGAAGCTGTCTATCCAGTCACTGTGTGTGCTCTCAACGTTGAAATATGTCGTTGATGGGCGCTACCTCCACGACAGAACAAGGCGCAAATGTGTCAAAGAACTCAAATGGATGTTGTGGTTTTGCATTCTCCTCAAGGGAATATGATATTTTCCTTTCTCATTCAAAGACATTAGGTGAGGGCAAGTAAGTGAACAACAAATTGCAAGATAATTGCCTGTGTACTTCCATAATAGTGGGCAGCGCATGATACACATTGTACCGTTCAGGGAAGTAAATGGGCAACGCGGAGGTAAGTTTTATTGATACATTGTTGCGTTTCGCTACAAAATTCACAATAGTTCAACAAACCGTTGTTTGGCCAAAACCGCGTGGAATGCCACGCAGGCAATAGCCTACTAAAACTACCCCAAAGTAAAGAGAAGTTGAACGGGGAGGGGGAGAAGTATGACTCGTGCATGCATTAATAAGATACTGTGACCTAGTATATCCAGACGTACTAAAAATGAAGACTGTAAGGAAATACTTTAGGGGTAGTGGGAGGGCACTTGCATTTGTTTTCATTGCATCTGTCATTTGGCTACTGTTTGATATGGTAGCACTTCGCCTGTCAATGAATGATGTTAACAGCCAACTTCTGAAAGAAAGCGTAGTGAAGGAAAGGCTGACTGTCACACCGCAGGCCACGGAGCGTACACAGTTAGACTTAGACCTGGACGAGGCAGGTACTAAAGGTCCACTCCAGAATGAAAAGAAAGTCCATGAAGTGGGCAGAAAGCGAGGACCTGCTGCCAAAAAGGACCCGCAGTTGAAGGACAAAGTCAATTCACATGAGCAACAAGGGGGGAATGCCCAACCAAAGTCAGAACAAGGAAATTATGTCATTTTTAAGCCTAACCAAATCGAAACAGTGAATCATGTCACAGGACAGTTGAGTGTGCCTTTGAATACGAAAACGCCCGTCAAAGATCCTTTGCCTGTCAAAGACCTGTCAAAAAAGGCAATGGACTTGATGCTAAATGTGGTGAAGTCCGAGGATAAGAATGTAGCGGTGCTTTCGAACTTCACCAAAGTGCCACCTGGTGTTCAAGAAGGAAAACATGTGGAAACATTGACCTCAAAAAAGACAGAGAAAGCAGAGAAAAATATAGGCCTAATGCAAAAAGCCAAAGCAAAAATGGACCAAAAGAAGAATGAGAGAGTCCGAGATCCACTGGAGCCTGGCATACAAGAAAGTTTTATAAAATACAAAGTTGCCGTGGACCACACAGTTAAATCTGTCAAAAAGGATGTACTGAAAGGAAAGGAGGTGGTCGTCAATATTAAGGACAAACGGATCAATGCCGTTGATAAAGGTAAGCCGTATGTCTTAAAGGAGACCGTACTTCCTAGAGCAAAGTTTAAACGTCAACCAGGAGTTCCCACAAACTCCACAGACGTTCGAAACACAGGCGTTCACAAAGTGCTGGCATTAGACATGACCGAAGCCCCCAGAGATGCCGACGCAATTGGGCAATTTGGGAAAGCAGCCATGGTGCCCAGTGACAAAGAGCAGGAGGTGAGGAACCGGTGGAATGAAGGCCATTTCAACGTGTACCTGAGTGACCAGATCCCTGTGGACCGAGCCATCCCAGACACCAGACCGCATACGTGTTCTGAGAGTGTGGTCCATGATGACTTGCCCACCACCAGTGTGATCTTCTGCTTTGTGGATGAGGTATGGTCCACTTTGCTCCGGTCCGTCCACAGTGTCCTCAATCGCTCTCCACCACACCTTCTCAAAGAGATCATCCTGGTGGATGACTTTAGTTCCAAAGAATATCTCAAGAACCACCTGGATGTGTACATGTCCCAGTTTCCCAAAGTGCGGATCGTACGTCTGAAGGAGAGGCAGGGCCTGATCCGAGCTAGGCTGGCAGGAGCCGCCATTGCCAAAGGTGATGTTTTGACTTTTCTTGACTCGCATATTGAATGCAACGTGGGCTGGTTGGAACCTCTGCTGGAGAGAGTGTACATAGACAGGAGGAAAGTGGCCTGCCCAGTCATTGACGTCATCAGTGACAAGGACATGAGCTATGCGTTGGTTGACAACTTCCAAAGAGGGGTGTTCAAATGGCCCTTGGTGTTTTGGTGGCGCAGGTTATCAGAGGACGTCATTAAGAAGAATCACATGAAGGCTTCAGATCCCATCAGGTGTCCCATCATGGCAGGAGGACTTTTCTCCATTGATAAGAAGTACTTCTATGAACTGGGCTCTTATGATCCTGGCTTGGATGTATGGGGTGGAGAGAACATGGAGATCTCTTTTAAGATTTGGATGTGTGGAGGTGAGATCGAGATCATCCCATGTTCCAGAGTGGGCCACATTTTCCGAGGCGCCAACCCATACAAGTTCCCCAAGGACAGGCAGAAGACGGTCGAGCGTAACCTGGCCAGGGTGGCAGAGGTGTGGCTGGATGAGTACAAGGACCTGTTCTACGGCCATGGATACTACCATCTGCTGGATAGGAGTGTCATCGACATCGGCAACCTCACAGACCAGATCGAGCTCCGGAAGAAGCTCAAATGCAAGAGCTTCAAGTGGTACCTGGATAATGTGTACCCAGACATGGCTGCTCCATTGGTCAAAGCTGAGGGGCTAGTTTTCAATCGTGGAGTAAGAAAATGCCTCGCTCTGCAGAAAGGCTCCCTTGCCTTTGAGATATGTGATCTCAGCAAGCTGAATCAGCACTTCAATTACACCTGGATGAGGCACGTTCGCCAGAAAGATGTCTGTCTCACTGCTCAGGACAAAGGTAGCAGCCTGGCTATGCAGCCGTGTGACAACACCAAGCCACAGCTACGCTGGCTCCACAAGGCCTCCAACTCTGCTCTGGTGGAGCACCTCGTTATGGAGCTTGCTTCCCAGCGTTTGTGTCTTGAGGCTGGGGCTCTGGGTGACCGCATGCAGCTGAAGAGGTGTGAGCCTACCAGTCCCTACCAGAAGTGGCAGTTCACACACTACCGCGCTGAATGACGGGAGTACAGGGCTACAGCACTATTCATGCATTAGTGATCAACACTCCGGTACttgactgtgctgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgttttggatttGGTCTGTTGCAATAGGAATACGCATGGTGTTGGTTTGAGGGTGGTGTTGGGATGTGCAatgttttcttaaaaaaaaaatatttttatatcATGATCAACTTTTGAATGACTTATGAGGCCCCGGAAATGATTTGAAAGGGCAGCTATTAGACAATGTAATCACAGTGTTTTTGGATGCATTGTTTACTGGAGTTGCACTTTTTATTGAGCTCTTTGGTTTTACACTGTATGTTCATCAGCTTTGCAAAAACAAATGTTCTCTAAAGAGCCGTGGCATATCGACTATTTTTCTACAGATGTTCTCTATATTGTCGCTCTCGGTTTGACCACACAATTGACCATATTTCCTACTGTTTCAGTGCCAAATGGCTGGATATATTATGCCACTTTTCCATGATTCATGTAAATACATATTTTCTGTCCTTGTACCATTTTCACTGTTTGAAATACCATTTTATGTACAAATTGATGAGCCTGTGTAGACATTACATATCACAGATAGCTTTGCtaaagacttttttttttttaatgagatTAAAAATAATTGCatttgcatgcatgcatgtgaGGTTATGACTCAGCTCTGGGTTGACGTTTCCCCTAAGGTACCGATCTAGGTTCAACTTCCCTTCCCCCAATCCTGAACCACCAACGATTAGTggggggaaatgcaaaactgacccaagatcagtgtctacGGGCCACTTCACCCTACACCGAATGTCTCACTTAGGATAATAAGAGCTGCTTCTTTATTACTATATGGGAATAGGtttagtacatactgtatgtatatttcTCTAACACTAGAGGGGACTGTTGTTGAAGGAATATcatttttttctccttttctgAATAGATATTAAAAATGATCATTTAA
>XM_021597027.2
CAGGCCACATCCACTTTCACGCCACCTTCGACGTACCCTAAAACGGTTTGCATAAAATGAAGCTGTCTATCCAGTCACTGTGTGTGCTCTCAACGTTGAAATATGTCGTTGATGGGCGCTACCTCCACGACAGAACAAGGCGCAAATGTGTCAAAGAACTCAAATGGATGTTGTGGTTTTGCATTCTCCTCAAGGGAATATGATATTTTCCTTTCTCATTCAAAGACATTAGGTGAGGGCAAGTAAGTGAACAACAAATTGCAAGATAATTGCCTGTGTACTTCCATAATAGTGGGCAGCGCATGATACACATTGTACCGTTCAGGGAAGTAAATGGGCAACGCGGAGGTAAGTTTTATTGATACATTGTTGCGTTTCGCTACAAAATTCACAATAGTTCAACAAACCGTTGTTTGGCCAAAACCGCGTGGAATGCCACGCAGGCAATAGCCTACTAAAACTACCCCAAAGTAAAGAGAAGTTGAACGGGGAGGGGGAGAAGTATGACTCGTGCATGCATTAATAAGATACTGTGACCTAGTATATCCAGACGTACTAAAAATGAAGACTGTAAGGAAATACTTTAGGGGTAGTGGGAGGGCACTTGCATTTGTTTTCATTGCATCTGTCATTTGGCTACTGTTTGATATGGTAGCACTTCGCCTGTCAATGAATGATGTTAACAGCCAACTTCTGAAAGAAAGCGTAGTGAAGGAAAGGCTGACTGTCACACCGCAGGCCACGGAGCGTACACAGTTAGACTTAGACCTGGACGAGGCAGGTACTAAAGGTCCACTCCAGAATGAAAAGAAAGTCCATGAAGTGGGCAGAAAGCGAGGACCTGCTGCCAAAAAGGACCCGCAGTTGAAGGACAAAGTCAATTCACATGAGCAACAAGGGGGGAATGCCCAACCAAAGTCAGAACAAGGAAATTATGTCATTTTTAAGCCTAACCAAATCGAAACAGTGAATCATGTCACAGGACAGTTGAGTGTGCCTTTGAATACGAAAACGCCCGTCAAAGATCCTTTGCCTGTCAAAGACCTGTCAAAAAAGGCAATGGACTTGATGCTAAATGTGGTGAAGTCCGAGGATAAGAATGTAGCGGTGCTTTCGAACTTCACCAAAGTGCCACCTGGTGTTCAAGAAGGAAAACATGTGGAAACATTGACCTCAAAAAAGACAGAGAAAGCAGAGAAAAATATAGGCCTAATGCAAAAAGCCAAAGCAAAAATGGACCAAAAGAAGAATGAGAGAGTCCGAGATCCACTGGAGCCTGGCATACAAGAAAGTTTTATAAAATACAAAGTTGCCGTGGACCACACAGTTAAATCTGTCAAAAAGGATGTACTGAAAGGAAAGGAGGTGGTCGTCAATATTAAGGACAAACGGATCAATGCCGTTGATAAAGGCGTTCACAAAGTGCTGGCATTAGACATGACCGAAGCCCCCAGAGATGCCGACGCAATTGGGCAATTTGGGAAAGCAGCCATGGTGCCCAGTGACAAAGAGCAGGAGGTGAGGAACCGGTGGAATGAAGGCCATTTCAACGTGTACCTGAGTGACCAGATCCCTGTGGACCGAGCCATCCCAGACACCAGACCGCATACGTGTTCTGAGAGTGTGGTCCATGATGACTTGCCCACCACCAGTGTGATCTTCTGCTTTGTGGATGAGGTATGGTCCACTTTGCTCCGGTCCGTCCACAGTGTCCTCAATCGCTCTCCACCACACCTTCTCAAAGAGATCATCCTGGTGGATGACTTTAGTTCCAAAGAATATCTCAAGAACCACCTGGATGTGTACATGTCCCAGTTTCCCAAAGTGCGGATCGTACGTCTGAAGGAGAGGCAGGGCCTGATCCGAGCTAGGCTGGCAGGAGCCGCCATTGCCAAAGGTGATGTTTTGACTTTTCTTGACTCGCATATTGAATGCAACGTGGGCTGGTTGGAACCTCTGCTGGAGAGAGTGTACATAGACAGGAGGAAAGTGGCCTGCCCAGTCATTGACGTCATCAGTGACAAGGACATGAGCTATGCGTTGGTTGACAACTTCCAAAGAGGGGTGTTCAAATGGCCCTTGGTGTTTTGGTGGCGCAGGTTATCAGAGGACGTCATTAAGAAGAATCACATGAAGGCTTCAGATCCCATCAGGTGTCCCATCATGGCAGGAGGACTTTTCTCCATTGATAAGAAGTACTTCTATGAACTGGGCTCTTATGATCCTGGCTTGGATGTATGGGGTGGAGAGAACATGGAGATCTCTTTTAAGATTTGGATGTGTGGAGGTGAGATCGAGATCATCCCATGTTCCAGAGTGGGCCACATTTTCCGAGGCGCCAACCCATACAAGTTCCCCAAGGACAGGCAGAAGACGGTCGAGCGTAACCTGGCCAGGGTGGCAGAGGTGTGGCTGGATGAGTACAAGGACCTGTTCTACGGCCATGGATACTACCATCTGCTGGATAGGAGTGTCATCGACATCGGCAACCTCACAGACCAGATCGAGCTCCGGAAGAAGCTCAAATGCAAGAGCTTCAAGTGGTACCTGGATAATGTGTACCCAGACATGGCTGCTCCATTGGTCAAAGCTGAGGGGCTAGTTTTCAATCGTGGAGTAAGAAAATGCCTCGCTCTGCAGAAAGGCTCCCTTGCCTTTGAGATATGTGATCTCAGCAAGCTGAATCAGCACTTCAATTACACCTGGATGAGGCACGTTCGCCAGAAAGATGTCTGTCTCACTGCTCAGGACAAAGGTAGCAGCCTGGCTATGCAGCCGTGTGACAACACCAAGCCACAGCTACGCTGGCTCCACAAGGCCTCCAACTCTGCTCTGGTGGAGCACCTCGTTATGGAGCTTGCTTCCCAGCGTTTGTGTCTTGAGGCTGGGGCTCTGGGTGACCGCATGCAGCTGAAGAGGTGTGAGCCTACCAGTCCCTACCAGAAGTGGCAGTTCACACACTACCGCGCTGAATGACGGGAGTACAGGGCTACAGCACTATTCATGCATTAGTGATCAACACTCCGGTACttgactgtgctgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgttttggatttGGTCTGTTGCAATAGGAATACGCATGGTGTTGGTTTGAGGGTGGTGTTGGGATGTGCAatgttttcttaaaaaaaaaatatttttatatcATGATCAACTTTTGAATGACTTATGAGGCCCCGGAAATGATTTGAAAGGGCAGCTATTAGACAATGTAATCACAGTGTTTTTGGATGCATTGTTTACTGGAGTTGCACTTTTTATTGAGCTCTTTGGTTTTACACTGTATGTTCATCAGCTTTGCAAAAACAAATGTTCTCTAAAGAGCCGTGGCATATCGACTATTTTTCTACAGATGTTCTCTATATTGTCGCTCTCGGTTTGACCACACAATTGACCATATTTCCTACTGTTTCAGTGCCAAATGGCTGGATATATTATGCCACTTTTCCATGATTCATGTAAATACATATTTTCTGTCCTTGTACCATTTTCACTGTTTGAAATACCATTTTATGTACAAATTGATGAGCCTGTGTAGACATTACATATCACAGATAGCTTTGCtaaagacttttttttttttaatgagatTAAAAATAATTGCatttgcatgcatgcatgtgaGGTTATGACTCAGCTCTGGGTTGACGTTTCCCCTAAGGTACCGATCTAGGTTCAACTTCCCTTCCCCCAATCCTGAACCACCAACGATTAGTggggggaaatgcaaaactgacccaagatcagtgtctacGGGCCACTTCACCCTACACCGAATGTCTCACTTAGGATAATAAGAGCTGCTTCTTTATTACTATATGGGAATAGGtttagtacatactgtatgtatatttcTCTAACACTAGAGGGGACTGTTGTTGAAGGAATATcatttttttctccttttctgAATAGATATTAAAAATGATCATTTAA

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 5-like isoform X2

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597026.2 False 4062 mRNA 0.45 10 47118728 47133302
XM_021597027.2 True 3964 mRNA 0.45 11 47118730 47133302

Neighbor

gene id symbol gene type direction distance location
LOC110504153 gpd2 coding upstream 90782 47020995 ~ 47027946 (+)
LOC110520046 LOC106586167 coding upstream 286440 46801058 ~ 46832288 (+)
LOC110520045 LOC106586166 coding upstream 341336 46724055 ~ 46777392 (+)
LOC110504152 LOC106586162 coding upstream 574433 46458590 ~ 46544295 (+)
LOC110520040 LOC106586160 coding upstream 676927 46341848 ~ 46441801 (+)
LOC110520055 cg057 coding downstream 112192 47245494 ~ 47255098 (+)
LOC110520054 LOC106586173 coding downstream 122862 47256164 ~ 47259319 (+)
LOC110520056 LOC106586174 coding downstream 181915 47315217 ~ 47441923 (+)
LOC110520057 dal1b coding downstream 309204 47442506 ~ 47445211 (+)
LOC110520058 tanc1 coding downstream 314075 47447377 ~ 47724843 (+)
G264985 NA non-coding upstream 158718 46959666 ~ 46960010 (+)
G264259 NA non-coding upstream 201392 46916418 ~ 46917336 (+)
G264255 NA non-coding upstream 208069 46910390 ~ 46910659 (+)
G264230 NA non-coding upstream 251669 46866837 ~ 46867059 (+)
G264229 NA non-coding upstream 253168 46865344 ~ 46865560 (+)
G265131 LOC106586170 non-coding downstream 10268 47143570 ~ 47144441 (+)
G265135 NA non-coding downstream 11846 47145148 ~ 47145451 (+)
G265137 NA non-coding downstream 12635 47145937 ~ 47146332 (+)
G265140 LOC106586171 non-coding downstream 26240 47159542 ~ 47159776 (+)
G265142 NA non-coding downstream 28778 47162080 ~ 47162296 (+)
G263859 LOC107588258 other upstream 933924 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 1039303 46075484 ~ 46079425 (+)
G263710 NA other upstream 1184310 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 1279248 45838921 ~ 45839480 (+)
G267358 NA other downstream 2377501 49510803 ~ 49512475 (+)
G267381 NA other downstream 2421196 49554498 ~ 49555838 (+)
G267529 NA other downstream 2703315 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 3028999 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 3469000 50601983 ~ 50618761 (+)

Expression


Co-expression Network