RNA id: XM_021597027.2


Basic Information

Item Value
RNA id XM_021597027.2
length 3964
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110520048
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47118728 ~ 47133302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCCACATCCACTTTCACGCCACCTTCGACGTACCCTAAAACGGTTTGCATAAAATGAAGCTGTCTATCCAGTCACTGTGTGTGCTCTCAACGTTGAAATATGTCGTTGATGGGCGCTACCTCCACGACAGAACAAGGCGCAAATGTGTCAAAGAACTCAAATGGATGTTGTGGTTTTGCATTCTCCTCAAGGGAATATGATATTTTCCTTTCTCATTCAAAGACATTAGGTGAGGGCAAGTAAGTGAACAACAAATTGCAAGATAATTGCCTGTGTACTTCCATAATAGTGGGCAGCGCATGATACACATTGTACCGTTCAGGGAAGTAAATGGGCAACGCGGAGGTAAGTTTTATTGATACATTGTTGCGTTTCGCTACAAAATTCACAATAGTTCAACAAACCGTTGTTTGGCCAAAACCGCGTGGAATGCCACGCAGGCAATAGCCTACTAAAACTACCCCAAAGTAAAGAGAAGTTGAACGGGGAGGGGGAGAAGTATGACTCGTGCATGCATTAATAAGATACTGTGACCTAGTATATCCAGACGTACTAAAAATGAAGACTGTAAGGAAATACTTTAGGGGTAGTGGGAGGGCACTTGCATTTGTTTTCATTGCATCTGTCATTTGGCTACTGTTTGATATGGTAGCACTTCGCCTGTCAATGAATGATGTTAACAGCCAACTTCTGAAAGAAAGCGTAGTGAAGGAAAGGCTGACTGTCACACCGCAGGCCACGGAGCGTACACAGTTAGACTTAGACCTGGACGAGGCAGGTACTAAAGGTCCACTCCAGAATGAAAAGAAAGTCCATGAAGTGGGCAGAAAGCGAGGACCTGCTGCCAAAAAGGACCCGCAGTTGAAGGACAAAGTCAATTCACATGAGCAACAAGGGGGGAATGCCCAACCAAAGTCAGAACAAGGAAATTATGTCATTTTTAAGCCTAACCAAATCGAAACAGTGAATCATGTCACAGGACAGTTGAGTGTGCCTTTGAATACGAAAACGCCCGTCAAAGATCCTTTGCCTGTCAAAGACCTGTCAAAAAAGGCAATGGACTTGATGCTAAATGTGGTGAAGTCCGAGGATAAGAATGTAGCGGTGCTTTCGAACTTCACCAAAGTGCCACCTGGTGTTCAAGAAGGAAAACATGTGGAAACATTGACCTCAAAAAAGACAGAGAAAGCAGAGAAAAATATAGGCCTAATGCAAAAAGCCAAAGCAAAAATGGACCAAAAGAAGAATGAGAGAGTCCGAGATCCACTGGAGCCTGGCATACAAGAAAGTTTTATAAAATACAAAGTTGCCGTGGACCACACAGTTAAATCTGTCAAAAAGGATGTACTGAAAGGAAAGGAGGTGGTCGTCAATATTAAGGACAAACGGATCAATGCCGTTGATAAAGGCGTTCACAAAGTGCTGGCATTAGACATGACCGAAGCCCCCAGAGATGCCGACGCAATTGGGCAATTTGGGAAAGCAGCCATGGTGCCCAGTGACAAAGAGCAGGAGGTGAGGAACCGGTGGAATGAAGGCCATTTCAACGTGTACCTGAGTGACCAGATCCCTGTGGACCGAGCCATCCCAGACACCAGACCGCATACGTGTTCTGAGAGTGTGGTCCATGATGACTTGCCCACCACCAGTGTGATCTTCTGCTTTGTGGATGAGGTATGGTCCACTTTGCTCCGGTCCGTCCACAGTGTCCTCAATCGCTCTCCACCACACCTTCTCAAAGAGATCATCCTGGTGGATGACTTTAGTTCCAAAGAATATCTCAAGAACCACCTGGATGTGTACATGTCCCAGTTTCCCAAAGTGCGGATCGTACGTCTGAAGGAGAGGCAGGGCCTGATCCGAGCTAGGCTGGCAGGAGCCGCCATTGCCAAAGGTGATGTTTTGACTTTTCTTGACTCGCATATTGAATGCAACGTGGGCTGGTTGGAACCTCTGCTGGAGAGAGTGTACATAGACAGGAGGAAAGTGGCCTGCCCAGTCATTGACGTCATCAGTGACAAGGACATGAGCTATGCGTTGGTTGACAACTTCCAAAGAGGGGTGTTCAAATGGCCCTTGGTGTTTTGGTGGCGCAGGTTATCAGAGGACGTCATTAAGAAGAATCACATGAAGGCTTCAGATCCCATCAGGTGTCCCATCATGGCAGGAGGACTTTTCTCCATTGATAAGAAGTACTTCTATGAACTGGGCTCTTATGATCCTGGCTTGGATGTATGGGGTGGAGAGAACATGGAGATCTCTTTTAAGATTTGGATGTGTGGAGGTGAGATCGAGATCATCCCATGTTCCAGAGTGGGCCACATTTTCCGAGGCGCCAACCCATACAAGTTCCCCAAGGACAGGCAGAAGACGGTCGAGCGTAACCTGGCCAGGGTGGCAGAGGTGTGGCTGGATGAGTACAAGGACCTGTTCTACGGCCATGGATACTACCATCTGCTGGATAGGAGTGTCATCGACATCGGCAACCTCACAGACCAGATCGAGCTCCGGAAGAAGCTCAAATGCAAGAGCTTCAAGTGGTACCTGGATAATGTGTACCCAGACATGGCTGCTCCATTGGTCAAAGCTGAGGGGCTAGTTTTCAATCGTGGAGTAAGAAAATGCCTCGCTCTGCAGAAAGGCTCCCTTGCCTTTGAGATATGTGATCTCAGCAAGCTGAATCAGCACTTCAATTACACCTGGATGAGGCACGTTCGCCAGAAAGATGTCTGTCTCACTGCTCAGGACAAAGGTAGCAGCCTGGCTATGCAGCCGTGTGACAACACCAAGCCACAGCTACGCTGGCTCCACAAGGCCTCCAACTCTGCTCTGGTGGAGCACCTCGTTATGGAGCTTGCTTCCCAGCGTTTGTGTCTTGAGGCTGGGGCTCTGGGTGACCGCATGCAGCTGAAGAGGTGTGAGCCTACCAGTCCCTACCAGAAGTGGCAGTTCACACACTACCGCGCTGAATGACGGGAGTACAGGGCTACAGCACTATTCATGCATTAGTGATCAACACTCCGGTACttgactgtgctgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgttttggatttGGTCTGTTGCAATAGGAATACGCATGGTGTTGGTTTGAGGGTGGTGTTGGGATGTGCAatgttttcttaaaaaaaaaatatttttatatcATGATCAACTTTTGAATGACTTATGAGGCCCCGGAAATGATTTGAAAGGGCAGCTATTAGACAATGTAATCACAGTGTTTTTGGATGCATTGTTTACTGGAGTTGCACTTTTTATTGAGCTCTTTGGTTTTACACTGTATGTTCATCAGCTTTGCAAAAACAAATGTTCTCTAAAGAGCCGTGGCATATCGACTATTTTTCTACAGATGTTCTCTATATTGTCGCTCTCGGTTTGACCACACAATTGACCATATTTCCTACTGTTTCAGTGCCAAATGGCTGGATATATTATGCCACTTTTCCATGATTCATGTAAATACATATTTTCTGTCCTTGTACCATTTTCACTGTTTGAAATACCATTTTATGTACAAATTGATGAGCCTGTGTAGACATTACATATCACAGATAGCTTTGCtaaagacttttttttttttaatgagatTAAAAATAATTGCatttgcatgcatgcatgtgaGGTTATGACTCAGCTCTGGGTTGACGTTTCCCCTAAGGTACCGATCTAGGTTCAACTTCCCTTCCCCCAATCCTGAACCACCAACGATTAGTggggggaaatgcaaaactgacccaagatcagtgtctacGGGCCACTTCACCCTACACCGAATGTCTCACTTAGGATAATAAGAGCTGCTTCTTTATTACTATATGGGAATAGGtttagtacatactgtatgtatatttcTCTAACACTAGAGGGGACTGTTGTTGAAGGAATATcatttttttctccttttctgAATAGATATTAAAAATGATCATTTAA

Function

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301199 lncRNA upstream 158720 46959666 ~ 46960010 (+) True G264985
TU300423 lncRNA upstream 201394 46916418 ~ 46917336 (+) True G264259
TU300418 lncRNA upstream 208071 46910390 ~ 46910659 (+) True G264255
TU300392 lncRNA upstream 251671 46866837 ~ 46867059 (+) True G264230
TU300391 lncRNA upstream 253170 46865344 ~ 46865560 (+) True G264229
TU301359 lncRNA downstream 10268 47143570 ~ 47144441 (+) True G265131
TU301363 lncRNA downstream 11846 47145148 ~ 47145451 (+) True G265135
TU301365 lncRNA downstream 12635 47145937 ~ 47146332 (+) True G265137
TU301368 lncRNA downstream 26240 47159542 ~ 47159776 (+) True G265140
TU301370 lncRNA downstream 28778 47162080 ~ 47162296 (+) True G265142
XM_036964882.1 mRNA upstream 90784 47020995 ~ 47027946 (+) True LOC110504153
XM_021597024.2 mRNA upstream 286442 46801058 ~ 46832288 (+) False LOC110520046
XM_036974308.1 mRNA upstream 341338 46724055 ~ 46777392 (+) True LOC110520045
XM_036974307.1 mRNA upstream 344782 46724055 ~ 46773948 (+) False LOC110520045
XM_036974304.1 mRNA upstream 575642 46459089 ~ 46543088 (+) True LOC110504152
XM_021597036.2 mRNA downstream 112192 47245494 ~ 47255098 (+) False LOC110520055
XM_021597037.2 mRNA downstream 112192 47245494 ~ 47255098 (+) False LOC110520055
XM_021597038.2 mRNA downstream 112192 47245494 ~ 47255098 (+) False LOC110520055
XM_021597039.2 mRNA downstream 112192 47245494 ~ 47255098 (+) True LOC110520055
XM_021597035.2 mRNA downstream 122862 47256164 ~ 47259319 (+) True LOC110520054
TU300304 other upstream 286486 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 286526 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 286596 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 933926 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 1039305 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 2377501 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 2421196 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 2703315 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 3028999 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 3469000 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile