G265140 (LOC106586171)


Basic Information

Item Value
gene id G265140
gene name LOC106586171
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47159542 ~ 47159776 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU301368
TGAGCCGGACGTGCTCATGTCATAGATGAGATCTTTAATACACTTGTCGGGGGGCATGAGACTCTGGTCGTCCAGGGGCTCCTCCACGTCATTCTTGTGGGCCCTGTTGTTGGCACAGCGCTGGCCCTGCACCACACACACCCCCAGCAGGATGCTCACACACAGCAGGGCAGAGGGAACCAGGATGACCGCTGCCAGCTCCAGCCTGCCCCAGCCGGGCTCCTCCGAAGGCCTC

Function

NR:

description
activin receptor type-1C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301368 True 235 lncRNA 0.62 1 47159542 47159776

Neighbor

gene id symbol gene type direction distance location
LOC110520048 LOC106586169 coding upstream 26240 47118728 ~ 47133302 (+)
LOC110504153 gpd2 coding upstream 131596 47020995 ~ 47027946 (+)
LOC110520046 LOC106586167 coding upstream 327254 46801058 ~ 46832288 (+)
LOC110520045 LOC106586166 coding upstream 382150 46724055 ~ 46777392 (+)
LOC110504152 LOC106586162 coding upstream 615247 46458590 ~ 46544295 (+)
LOC110520055 cg057 coding downstream 85718 47245494 ~ 47255098 (+)
LOC110520054 LOC106586173 coding downstream 96388 47256164 ~ 47259319 (+)
LOC110520056 LOC106586174 coding downstream 155441 47315217 ~ 47441923 (+)
LOC110520057 dal1b coding downstream 282730 47442506 ~ 47445211 (+)
LOC110520058 tanc1 coding downstream 287601 47447377 ~ 47724843 (+)
G265137 NA non-coding upstream 13210 47145937 ~ 47146332 (+)
G265135 NA non-coding upstream 14091 47145148 ~ 47145451 (+)
G265131 LOC106586170 non-coding upstream 15101 47143570 ~ 47144441 (+)
G264985 NA non-coding upstream 199532 46959666 ~ 46960010 (+)
G264259 NA non-coding upstream 242206 46916418 ~ 46917336 (+)
G265142 NA non-coding downstream 2304 47162080 ~ 47162296 (+)
G265141 LOC106586171 non-coding downstream 6921 47166697 ~ 47166990 (+)
G265147 NA non-coding downstream 12509 47172285 ~ 47172500 (+)
G265148 NA non-coding downstream 12730 47172506 ~ 47172818 (+)
G265150 NA non-coding downstream 15097 47174873 ~ 47175160 (+)
G263859 LOC107588258 other upstream 974738 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 1080117 46075484 ~ 46079425 (+)
G263710 NA other upstream 1225124 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 1320062 45838921 ~ 45839480 (+)
G267358 NA other downstream 2351027 49510803 ~ 49512475 (+)
G267381 NA other downstream 2394722 49554498 ~ 49555838 (+)
G267529 NA other downstream 2676841 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 3002525 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 3442526 50601983 ~ 50618761 (+)

Expression


Co-expression Network