LOC110520054 (LOC106586173)


Basic Information

Item Value
gene id LOC110520054
gene name LOC106586173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47256164 ~ 47259319 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597035.2
TTTGCACTTGTGGCTGTAGTAATATTGTGGCTACAAATATTGTGTTTACAACATATTGTGTCATAATTCAACAGTTGATAGCAATTGTAAATGTTTTCTTCATATTTATTTTAGGATACAGCGAACAACTATGTCACCTATTTTACTGAACGGTATAGGGACTGTCGATGACCATTCTGAATATATCGAACCCGAGGTCCCTTTCAAGAACCCCCAGATCCATGTGAAGAACCCCCATTTGGATACAATGGAAGAGGACATTCTCTATCACTTCAACCTGGGGACCAAGACCCACAACCTACCAGAGATGTTCGGAGACATCAAGTTTGTGTGCGTCGGCGGCAGTGCCAATCGGATGAAGTCCTTTGCCCAGTTCATTCACCAGGAGCTGGCCTTGCCCGGAAACATGGATGACGTCACAGACATCTGTGAGGGAACCGACCGCTACTCCATGTACAAAGTGGGACCCGTACTTTCTATCAGTCATGGTATGGGCATCCCTTCCATCTCCATCATGCTCCATGAGCTCATCAAACTGCTGCATCATGCCCGCTGCATCGACTTCATCCTCTTCCGCATTGGCACCTCCGGTGGAGTCGGTCTGGCACCAGGAACAGTAGTGGTCACAGACAAGGCGGTGGACTGCTTCTTCCGCGCCCAGTTTGAGCAGGTGGTTCTAGGTAAGGTGGTCACAAGGAGCACAGAGCTGGACGTGGGCGTCTCCAAGGAGCTGCTGCAGTGCTCCTCCGAGTTAGAGGACGTGCCCACCATCATCGGCAACACCATGTGCACCAGTGACTTCTATGAAGGTCAGGGTCGGCTGGATGGAGCTCTCTGCTCCTTCTCCACTGAGGACAAGTTGGAGTACCTGAGGAAAGCCTTTAACACGGGAGTCAGGAATATTGAGATGGAGTCCACTGTCTTCGCAGCCATGTGTCGTGCCTGTGGCATCAAAGCTGCAGTCGTATGCGTGACTTTGTTGAACCGTTTTGATGGGGACCAGATCGCCACCCCTCATGATGTGCTGGTGGAGTACCAACAGAGACCTCAGGTTCTGGTGGCCCACTTCATCAAGAAACGCCTGGGCCTCGTCGTCTAAGCTCCCTCCGATCACCTCTGCTGCCCTTGGAGTGTATATAGCTACAGTCCCAACTGATATGTGGATATATGTATATAGACAAGTTGATATGTGATCAGATATTATTTAAACGGAGTTGTAAGAGTACATGAAAATACATTTTGCAAACGAAGCTCAAAGAGTGGGCTCTTATGCAATTGTGTGGTATTTGTGTATATTTGTATGGTATTATATATTGTGTGACTTGAGTACTTTGACTGTGTAGATGAAATCGTTTGTCTGTGTTACTTCTGGATGACATTAAGTCCCGTGACTTAAAATGAATCAAATATTTAAACAAAGAAGCACTCTGACTGTAATTGAATCAAATGACTCATGCAGGAGTTAGGCACTGGTGTAGCTGGGATATATTTAGAAATGGAAATACATCTGACTTCATTGTACCTGACATTTTAAAATCATGAATAAATTCATTTCAGGCCTGGCTGA

Function

NR:

description
uridine phosphorylase 2-like

GO: NA

KEGG:

id description
K00757 udp, UPP; uridine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597035.2 True 1567 mRNA 0.46 7 47256164 47259319

Neighbor

gene id symbol gene type direction distance location
LOC110520055 cg057 coding upstream 1066 47245494 ~ 47255098 (+)
LOC110520048 LOC106586169 coding upstream 122862 47118728 ~ 47133302 (+)
LOC110504153 gpd2 coding upstream 228218 47020995 ~ 47027946 (+)
LOC110520046 LOC106586167 coding upstream 423876 46801058 ~ 46832288 (+)
LOC110520045 LOC106586166 coding upstream 478772 46724055 ~ 46777392 (+)
LOC110520056 LOC106586174 coding downstream 55898 47315217 ~ 47441923 (+)
LOC110520057 dal1b coding downstream 183187 47442506 ~ 47445211 (+)
LOC110520058 tanc1 coding downstream 188058 47447377 ~ 47724843 (+)
LOC118958036 NA coding downstream 587734 47847053 ~ 47851905 (+)
LOC110520065 LOC106586184 coding downstream 670002 47929321 ~ 47948028 (+)
G265120 NA non-coding upstream 70543 47184571 ~ 47185621 (+)
G265152 NA non-coding upstream 78529 47175948 ~ 47177635 (+)
G265150 NA non-coding upstream 81004 47174873 ~ 47175160 (+)
G265148 NA non-coding upstream 83346 47172506 ~ 47172818 (+)
G265147 NA non-coding upstream 83664 47172285 ~ 47172500 (+)
G265577 NA non-coding downstream 220923 47480242 ~ 47480460 (+)
G265620 NA non-coding downstream 326030 47585349 ~ 47585634 (+)
G265621 NA non-coding downstream 326509 47585828 ~ 47586049 (+)
G263859 LOC107588258 other upstream 1071360 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 1176739 46075484 ~ 46079425 (+)
G263710 NA other upstream 1321746 45934119 ~ 45934418 (+)
G263547 LOC106586150 other upstream 1416684 45838921 ~ 45839480 (+)
G267358 NA other downstream 2251484 49510803 ~ 49512475 (+)
G267381 NA other downstream 2295179 49554498 ~ 49555838 (+)
G267529 NA other downstream 2577298 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 2902982 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 3342983 50601983 ~ 50618761 (+)

Expression


Co-expression Network