RNA id: XM_036974308.1


Basic Information

Item Value
RNA id XM_036974308.1
length 5682
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC110520045
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46724055 ~ 46777392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAAAAGGACTATTGCCTCTATAGTTTTCATGGTAGATTGCACCAGAATGTATCGCCTGTCCGTTACCCCGTTATACATTATTCTTTCCGAGAACAGGTGGATACAAAGACATATCATTTTGCGCTGCATAGAATGTTAGAGATTACAGGGGAACTTGTTTAGGCTACAATATATCGGTAGTCTACGTGTCGCGTCGGGGGGACTGCGGTACATCTGAAGACGGACTAGCAAAGACTGTCAAGCAAGGAAGATTGCCAACCAGCAACATCATCGGGACGTAAAATTATGCTCTTCATTCAGATACAGGTTTCCCGTCTGCGGAACATTTGGATTGATAGTTTGATTTACCATTTCAACCATTCAAAAATGATTAGTGAATTACATTAGTGCTGTTAACCCAATGCAACACGTTGCTGGCAAGCGAGAAATCATTGTGCCATTAATTGATTACAATAAGACATATTTTCTtggGATGACATCCCGGTGTGTCTCCCCTCCGTTACCTTGTTTAGTCTCCAGAGTTCCTGCTTTCTGTCAGGGGCCAGCCTGCTGATTCCTCTCTGCCGCCACGTCACGTCACGGGGGGCCGATGCGGCGTTTCGTATACTGTAAGGTGGTGCTGACCACCTCGCTTGTCTGGGTGCTGGTGGATGTCTTCCTGCTGCTCTACTTCAGTGAATGTAACAAATGTGACGACAGGAAGGACCACTCACTGCTGCCTGCTCTCAGAGCAGTCATGTCGCGAGCCCACGAGGGCCCGGGGGAGATGGGGAAAGCGGTGGCTATCGCAAAGGACGAGCAAGAGAAAATGAAGGAGCTCTTTAAGATTAACCAGTTCAATCTGATGGCCAGTGACATGATTGCTCTCAACAGGAGTCTGCCGGACGTGAGACTGGACGGTTGCAAGACGAAGGTGTACGCGGACGATCTCCCCGACACCAGCATAGTGATCGTGTTCCACAACGAGGCGTGGAGCACCCTGCTCCGCACTGTCCACAGTGTCATCAACCGCTCGCCACGGCACCTGCTGCAGGAGATCCTGCTGGTGGACGACGCCAGTGAGAGAGACTTCTTGGGAAAGAAGCTGGAGAACTATGCTCGTACCCTGGAGGTTCCCGTGCGGGTCCTGCGGATGGAGCAGCGAACGGGGCTGATCCGGGCCAGGCTAAGAGGGGCAGCTGCCACACGGGGACAGGTCATCACCTTCCTGGACGCCCACTGTGAATGCACAGTGGGCTGGCTGGAGCCTCTGCTGGCCAGGATCAAAGAGGACCGGAGATCTGTGGTATGTCCTATAATCGATGTGATCAGCGACGAGACGTTTGAATACATGGCGGGCTCAGACATGACCTACGGAGGATTCAACTGGAAGCTGAATTTCCGTTGGTACCCCGTGCCTCAGAGAGAAATGGACAGgcgcaaaggggacaggacattACCACTCAGAACCCCTACTATGGCTGGAGGGTTATTCTCTATTGACCGGACATATTTTGAAGAAATTGGCACGTACGATCCAGGGATGGACATTTGGGGCGGAGAGAACTTGGAGATGTCTTTCAGGATCTGGCAGTGTGGCGGCTCGCTGGAGATTATAACATGTTCCCACGTGGGTCATGTGTTCCGGAAGGCCACCCCATACAGCTTCCCCGGGGGCACAGGCCAAGTCATCAACAAGAACAACAGGCGATTGGCCGAGGTGTGGATGGACGGCTTCAAAGACTTCTTCTACATCATATCACCAGGTGTGGCCCGGGTGGACTATGGAGACGTGTCCTCTCGCAAGGCCCTGCGTGAAGCTCTGCAGTGCAAACCCTTCTCCTGGTACCTGGAGAACATCTACCCCGACTCTCAGATCCCCCGGAGATACTACTCACTTGGTGAAATCAGAAATGTTGAAACAAACCAGTGTGTGGACAACATGGGCAGAAAGGAGAACGAGAAGGTTGGCTTCTTCAACTGCCATGGCATGGGTGGGAATCAGGTGTTCTCGTACACGGCTGATAAGGAGATCCGGACAGATGACCTGTGTCTGGACGTGTCTCGCCCCCATGGCCCTGTGGTCATGCTGAAGTGTCATCAAATGAAGGGGAATCAGATGTTTGCGTATGACGCAGAGCGGCTGACCCTGCTGCACGTCAACAGTAACCAGTGTCTGGACATGCCTACTGAGGAGGACAAGATGGTGCCCACCCTGAGAGACTGCACAGGCAGCCGCTCCCAGCAGTGGTTCCTCCGCAACATGACACTGACGCTCTGATCTGACGAGGAGCAGGACCTCCAACTTCACTCACCACCACCCTGGCCAGTTTCGCCCCCACCTGAACCACCGCCCACTTCGCTCCCGCTGGCCACTACCTTTGCCTCGCTCCACcaggtatttttttttaaatcatgcaCACGCTCCTGCCTCCTTCAACACTCGCAGGTGGGGAAGAAGCAGGCAGGTAGCAGcctgtgttttttgtgtgttttttttcccacGGGGCTTCGGAGGCTCGGCAAGGGCGTTATCTGCGATTCCGATCCCCTCATTCAATCAATATTACACACAGTGGCTGGCAAGAGGTTGGCGTGCACACTCTCAGCCAGAAAATATCTGTATGGTTGACTCATATGAACGGGTCTGAGGTGACGTTGACTCACACTTTTACATATGGAGGAAGCTGGAATCAGAGTGACTATCGCACTGACGGTACCGTATATGTCAGATGGCTCTCAAACCTGGTCGGGTGTGCGTTCAGAGGTTCCCGACTTTTGTACAGCAGCAGCACCGATAGCAGGACACCATTTGTACGTCTGTGGGATCTCGCAGACTATGTACTCTGGCTCTGAACACAAGTGTGTGTTTAAAGCTTAGCCCTGAAAAGAGATGATTCTGTTCGGACATTGTACACCCCCCAATTCACATCTATGTTGGAGCCACGTAGTACATCTGAGGGTGAAGGGTAAGGGTTGCTGTTGTTGATGGGTACATATCAAGAGGCTGACAAAACGCAAAACAGAGGTGATACAGAACTCGTGCATGGAGGCATATAGCTGTCAAATCTAATTTACCATTATCCAATTTGCATTACAAATGTAATTTCGGCAGCTTTTTTGCTTCAATGCTCAATGGCATAAAGGTTTGCACTGTCCCTTTTGTAATTACAGGAAATAGATATGTCATGTCATAACACTGTTTCAAAACACAACTGTATATCTGAGGCCAAAGTTACTTGGATTGATACGGTATGCCTTAAGAGAAATAGTCCATTATTGAATGGGTCAAGGAATTTAGAGAAAGGAAAAAATCTTGACAAGCTTTGCCTCAAAGTCAACCCGGAGTAGTTGTCACAGAATGCAGTTGTTTGTTGAAATTGTTTGTACTGCACTGTAGCACGGTCCGCTCCCCAAACATTGGGTTATTGAATGTATCGTTTATTTTGGATACGTCTGTCTACTTGAAGGTTCCCTTATTCTACTTTAGACATTATGTCCATCACTTTCATTAAAATAGTTTACTTATCATTTGCACGGTTCATTATAACATATCATTTGCCCGATCTAAACATAAAGCAAAAATTATCTGTCGACATGAAAAGGTTGTGAGTGCATTTACAATGTCGGTTTGAATATCAAGTTTCTTGTTTATTTAATTAAGCTATTGTGAAGTCTAAAGCTCCCCGAAACATCTCAGCATTAGTGAATCGATCAATATGAACAATGGCAACAGTATAATGAGACTAAACAAAACTCATCGTGTTTTACCACTTTACTGTGCCATTTTGATGGTCAGTCAAACGATGCGTCCTGAATCGTACCCTGTTGTACTATTTTTGAGCAggtctcatagggctctggtctaaaagtagtgctctatataggtaACAGGggaccatttgggatgcatgaaAAAATGTCTTGATTATGATCAAGATTTTTTGAAAACGGATCAACTATGTTTTTCAATGGATTGTCAAACCGGACCCGCTGACATCCATCCGGTGGTGTAAATAAATAACGGCCATCATCATGTTTTCGTCgtcacagtgactgtacatacagaaCCAATTATTTTTCTAAGACGCTGTGAAACTTGAAAGCCCCGTTGAAATGTAGAGCGTGGCATGGTTATGTCATTGAATCCATTGCCCGTGCGCTGTTCAGAAATACCAATGGAACTCTGTTAATGCTTTCTAGGGGGTTTTATGAAATGTGCAATGTGTTTTAGAGGTTCATCAGCAAAAACCCACAAACTACCTAATGGACATTACTGTACTAAAACGGATTCAAACTATCTCGATGCTTGAACACTGTCATATCTATGCCTACTGTTTGTTTGGCATTCAGACTCAAATGAAATGAACTCTGTTTACGTTCATATATATTTATCGTTTAGTTTCACCTAGATTATCTTtaggtgtagggtgaagttgcccctagactcATATCCCCCCACTAATAGTTAAGGTTGGGATTGGGGAagaggaagctgatcctagatctgttccGACagtaggggaaacttcaccccgtAGCTTATCTTGACATGCATGGTACTACAATAGGAATGTACTATAGATTGTGTTTGAATTTTGAACTGTTACCCTGTACATGTATTGGTCTAAGCTGATGTATGTTACCTGTTTgtacatttttgtaaaaaaacacccccaaaaaaagaagaagaaatgaAAAAAAGTTATCTTGATGGAATCTGCCATGTGTTTGATTACTGGGGGATGATACGAACCAATGAAACGGTGAACGACAAATCGAATAAATCTGTTGTTGATTAAACATTTCTGTTGAAACTTttagggcccccccccccccccctgtgtctCCCGTCTCCTCCTTAGCTCtagggatgcgtcccaaatggcatcctgtttTCTATgtgctgcactacttttgaccagggcccatcggGCTCTAGgtccctggtcagaagtagtgctctatagagggaatagggtgccatttgggactcaacctTAATATCTACTAGGAGCCTGGTGGGCGCTTTAACCATGGCTCAATGATACGCTCATTATAGTTGCTGGGTCAGGTCTAGAGTTAGTCTATGGAGAAGGTCCAGTATAAACTGGGTCCGGGTTTCAATCTGATTGCCCTTTGCCGACAATGCGTcctttaaaggcaatgttcccgctttCGCAGAGAccacattcacggtaaacgctgcatataaaaaaatatatatatatgtattttccttctagcactgactttgataataactactttattgagggaaaatgtacttgctaTGGCTGtgtatatgtggttgtctcacccagCTGTCTtgagatgaatgcactaattgtaagttcgctgtggataagagtgtctgataaatgactaaaatgttaatATGTCGGCGCAAACTGAAACGGCCTTTTAAATGGCGCGTTGTCGACAAACCCGCGATCGGATTGAATCTCATgtcaaaatggcttccaataaAGACTCGGTCTAAGGTTGAGGTCTTGACGACAAACGATTTCACACTAATTTGGTTTATAGAGGCCTTACATTACTGGAAAACTGTCTCAAAGCGTATTTGCATAATATTACATGTAATGGCATAACTTAATTGCTTCACTGTATATTTCCCTTTTCCCCACCCACATCAGAGAAtgggagtttttttttaaaataaatatttgtaaaCCTCT

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300220 lncRNA upstream 106649 46576728 ~ 46617406 (+) True G264067
TU300101 lncRNA upstream 386279 46337038 ~ 46337776 (+) True G263962
TU300091 lncRNA upstream 404855 46318948 ~ 46319200 (+) True G263952
TU300083 lncRNA upstream 415482 46308356 ~ 46308573 (+) True G263944
TU300078 lncRNA upstream 421601 46302235 ~ 46302454 (+) True G263939
TU300391 lncRNA downstream 87952 46865344 ~ 46865560 (+) True G264229
TU300392 lncRNA downstream 89445 46866837 ~ 46867059 (+) True G264230
TU300418 lncRNA downstream 132998 46910390 ~ 46910659 (+) True G264255
TU300423 lncRNA downstream 139026 46916418 ~ 46917336 (+) True G264259
TU301199 lncRNA downstream 182274 46959666 ~ 46960010 (+) True G264985
XM_036974300.1 mRNA upstream 179760 46458590 ~ 46544295 (+) False LOC110504152
XM_021597024.2 mRNA downstream 23666 46801058 ~ 46832288 (+) False LOC110520046
XM_036964882.1 mRNA downstream 243603 47020995 ~ 47027946 (+) True LOC110504153
XM_021597026.2 mRNA downstream 341336 47118728 ~ 47133302 (+) False LOC110520048
XM_021597027.2 mRNA downstream 341338 47118730 ~ 47133302 (+) True LOC110520048
XM_021597036.2 mRNA downstream 468102 47245494 ~ 47255098 (+) False LOC110520055
TU299995 other upstream 539251 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 644630 46075484 ~ 46079425 (+) True G263733
TU299841 other upstream 789637 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 884575 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 2198647 44520419 ~ 44525408 (+) True G262037
TU300303 other downstream 53616 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 53616 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 53616 46831008 ~ 46832204 (+) True LOC110520046
TU303780 other downstream 2733411 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 2777106 49554498 ~ 49555838 (+) True G267381

Expression Profile