RNA id: TU299866


Basic Information

Item Value
RNA id TU299866
length 3942
RNA type TUCP
GC content 0.43
exon number 1
gene id G263733
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46075484 ~ 46079425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GcactttttttattattaaacattaagtaacaaacaaacagccccAATGGTGTAAGAAAGGACATGCCTGGTATCATTTGTACACACAGACTTATGTACAATGATGTGCTATAGCACAGGAAATGATGTTTTTTGAAgaaagcataggctactgtattGAACTATAAGCATTTTTACCACCCAGTTTTAGGTAGAAATAGTATTACTGCATCTTGCCAACAGGAAGCGAGGCTGATACACCAATTTGCTCAGTGGTAGGTTTGAAGTGTTGTACAGTGGAGCATACTATCAGCGTTGTGTTTGGTTCGATATATACATATGGTTGTTTATGAGTTGCCGTTTCAATGCCATTACGATCAGCGTAATACTTTAAGTGATTGATGAAAAAGACCATTCTTCACAAttcatgaagaaaaaaaatgctgAGAGTCTTACATACTCGTACATCATTACCCACAGGAATGCTTAacgtgcttcccaaatggcagcctattgcctatagtgcactacgtttgaccagtgctatgggcccctggtcaaaagcagtgcactacgtagggaatagggtgccatttaggatacaCACTTAGAGCCTGTTGATGTACACAGCATGTGTGACTGCACGTCACAGCATGCCACTTGTCAATGATAAGCATGATGCTCTGCGGCCGCTGTAGCAAAAAGTTAGAAACAAATATCGTTTCATAATAAGAATAAATAAACaaagacatcaaatcaaatcaagttacCAGTTCTAATACTTAAATAACaaacaatacttaaaaaaaaaaaaaaaagtaaaataaaggCTGGATTTTCAAATCCTACACTGTTGGGACTAGGCTATCCTACATTAAGTGCTCAATCAGTGTTCTAGACCCGTCAGTGCTCATCGCACAAGCAAACAATCCTATTGAGTAAATGGCAGACAAGAAGCACTAGAAAtgaattacccccccccccatcaaaatGTGAAGACTTATTGTAAAACGATTTGGGTCTGAGAACAGAAATATACAACACTTATGTGCACTGCCGATTTGGATCGAAGTTTGCAGCAGGTCCTTCCAGAAGTAGTTTTGAACATTCAATTACAACTGAACTTGAGTCTTATGAGTGGTCTCTTAAATGAACATGAGtgaaccaacaaaacacatttgaaATGATCATGGAGGTGACAGATATGTACTGACACAAAAATGCAGCATAATGTGATGTGATAGATTCTTTCATTCATACCCCAAATCTCACAATTGGAAAAATAGGCATTATACTATATCTACACATTATGCACACTCTAAGGCAgggggttcccaaacctttttcaCTCTGCCCCCCCCTTCCAAGTAATGGGGAACATCCTGCCACATCTATTTCTATgtgcacaagcactgttcatgacaaacTGTTCAACACCCCTCTTATTGGTAGAGAGcattttgcaggtttaaagcttatttccttcaattctacacattttgtcataggGTTGCAAAGAACATTATTTTTTTCAGTTCTATATGTGTTGctatgtctaatgtgtattcatttgatatttgagtgacaaagAAATTGGGCTAAAAAAACCTAAATATAAAAacgctagctgacatgggctagttgatctggacatttctgacagctttgcacactcttggtattctctcaaccaagcttcatgagttagtcacctggaatacatttcaaacaACAGGTGTGccgtgttaaaagttaatttgtggaatttcttccttcttaatgcgtttgtgccaatcagttgtgttgtgacaaggtagggatggtatacagaagatagccctatttggtaaaagaccaagtccatattatggcaagaacatctcaaattaGCAAAATGAAacaacagcccatcattactttaagacatgaaggtcagtcaatctggaaagttTCAAGAACTTGGAAAGTTttctcaagtgcagtcgcaaaaaccatcaacggctttgatgaaactggctctcatgactaccgccacaggaaaggaagacccagagttacctctgctgcagagaatacgttacagttaactgcacctcagattgcagcccaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaactgttcagaagagactgcgtgaatcaggccttcattgtcaaattgctgcaaagaaaccactactaaaggacaccaataagaagaagagacttgcttgcgccaagaaacacgagcaatggacattagaccggtagaaatctgtccttacatctgatgagtccaaatttgagatttttggttccaaccgctgggTCTTTGGAAGATgcggagtaggtgaatggatgatctccgcatgtgtggttcccaccgtgaagcatagaggatgaggtgtgatggtgcttcgCTGCtggcactgtctgtgatttatttagaattcagggcacacttaaccagcatggctaccacagcattctgcagcgatacgccatcccatctggttttagcttagtgggactatcatttgtttttcaacaggacaatgacccaaaacacatgtctaggttgtgtaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcccccgacctcaacccaattgagatggttttggatgagttggaccgcagagtgaaggtaaAGCAGCCAACAACTCCTATATGTTCCTATATTCCACCTATATGTTAttctgaagctggttgagagattgccaagagtgtgcaaagctgtcatcaaggcaaagggtggctactttgaagaatctaaaatctattttgatttgttaaacactttttttggttactacatgatttcatagttttgatgtcttcacaattattctacaatgtagaaaatagtaaaacataaatAACTTGAACTGGTATTGCTCTGCGGCCCCCTGCCgaccccacagtttgggaaccactgctccaAGCGACCAATGCTGAATATTTCTTCACATACAATAGCACTTACTCAAGTGTTAACCACGTTCTACAATAAATTACATTCAACAGTTATACTACCTCTCATAGATCTTTCTCTGATAGTTATAATTTCCAAGGATGatatttagaaatgttggcaTTTACAATAGATGGACACAACAAGAGTAATATGGCGTCTATGGCTTCATACTACAGCTCTGAAAcatctcaatcaatcaaatgtcaaTGTCTTGGCTACTGGCATTTTGAACAGACATGATATCCACATAACATGTTTGTTGACAAGTTATTATCCCCTATTCAGAGTCACATTTTCATGGGGAGCCATGTATCAATGGTCCTGTAGTACTGCTAACAGTGTGTTTTCATTCCACCTGTGTGTTGTATTCATAGGGTGTTTATAGGGTGTGTCCCATGCTACTGGTCACCAGTCCCTTGATGTTGGTGACAGGGCGCACATCGTGCAGCTGCCGCCGTCTGTCAATGAAGGAGGCCAGGCGACCAGTGTCCAGTGGGTTCTTGGAGTAGTCTCCACTGTGGGcacccacccagggatgctggaGACAGGCGGTGGCACTGGgcctcttcctggggtcctgcTGCAGGGTAGATTTGATGAAGTCCCGGGCCGCCTGACTCACTCCCTGGAAGTAGTCCTCGGGGAAGCAGAAGTCCAGCTTGCAGATGTTGACGCACGTTTCCTCTAGGCTCTCGTCCAGGAAGGGCGAGACGCCACTCAGCATGACGTAGGCCAGGACACCGGCGCTCCACACGTCCGTGCTCAGTGACACCGGGGTGCCCTGGATCAGCTCCGGAGCAGCAAACTCTGGGTTTCCCAGGAGCAGGTGGACATAACGGTGGCCAGACACCTGGACCGCATCTCCAAAGTCTATGAGCTTGATGCAGGGAACAGGCACGTGGAGATCCACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299864 lncRNA upstream 19481 46048049 ~ 46056003 (+) False G263732
TU299865 lncRNA upstream 19481 46048049 ~ 46056003 (+) True G263732
TU299902 lncRNA upstream 53719 46019689 ~ 46021765 (+) True G263769
TU299897 lncRNA upstream 63024 46012233 ~ 46012460 (+) True G263764
TU299896 lncRNA upstream 63264 46012021 ~ 46012220 (+) True G263763
TU299934 lncRNA downstream 4951 46084376 ~ 46085016 (+) True G263798
TU299973 lncRNA downstream 78624 46158049 ~ 46158282 (+) True G263837
TU299978 lncRNA downstream 84115 46163540 ~ 46163769 (+) True G263842
TU299979 lncRNA downstream 84476 46163901 ~ 46164207 (+) True G263843
TU299982 lncRNA downstream 87641 46167066 ~ 46167307 (+) True G263846
XR_005046468.1 mRNA upstream 31639 46032765 ~ 46043845 (+) True LOC118957146
XM_021597003.2 mRNA upstream 64837 46008199 ~ 46010647 (+) True LOC110520034
XM_021597002.2 mRNA upstream 142462 45903665 ~ 45933022 (+) True LOC110520033
XM_036974278.1 mRNA upstream 191290 45852182 ~ 45884194 (+) True LOC110504149
XM_021596998.2 mRNA upstream 252183 45726239 ~ 45823301 (+) True asic4a
XM_036974285.1 mRNA downstream 262423 46341848 ~ 46441801 (+) False LOC110520040
XM_021597013.2 mRNA downstream 263821 46343246 ~ 46441801 (+) False LOC110520040
XM_021597014.2 mRNA downstream 263834 46343259 ~ 46441801 (+) False LOC110520040
XM_036974293.1 mRNA downstream 263841 46343266 ~ 46441801 (+) False LOC110520040
XM_021597011.2 mRNA downstream 263983 46343408 ~ 46441801 (+) False LOC110520040
TU299841 other upstream 141066 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 236004 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1550076 44520419 ~ 44525408 (+) True G262037
TU297744 other upstream 1822933 44252069 ~ 44252551 (+) True G261749
TU292451 other upstream 5623304 40440069 ~ 40452180 (+) False LOC110519969
TU299995 other downstream 104709 46184134 ~ 46184804 (+) True G263859
TU300303 other downstream 751583 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 751583 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 751583 46831008 ~ 46832204 (+) True LOC110520046
TU303780 other downstream 3431378 49510803 ~ 49512475 (+) True G267358

Expression Profile