RNA id: XM_036974285.1


Basic Information

Item Value
RNA id XM_036974285.1
length 7971
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC110520040
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46341848 ~ 46441801 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGACAGGTTGTGAAGTCAGCTGCAAGTCAAGAAATGCATTTTACCGGGGGGACTGTAACAGCCAGGAGACGTGGCAGGATTTGGGACGCACACAAACCCAGCCCTGGGGCAGCCAACTAGCAAGCATCAGGCTTCCGGAACACTAAACAGAAGCAGGCCTTGATCCACCACTGCCCCTCCGACTGTGAAGCCAGCCCACCACGAAGATACACAAAATATGGGGGATGTGCAGCTTGTGACAACGCGGATCTCCAAGACCAGCCTGACACAAGGCCGAGGTTCCCCAAGTCAGGATCCTCCAGCCTTCACTCTCCCACCCCGCAATGCCCGGGTCAGTCTGGGAGGGACAGCGCGGCTGGATGGGAAGGTGAGAGGATACCCTGAGCCCCAGGTCACGTGGTCCAGGAATGGGAAAGCAGTGACGGCTGGAGAGCGGTTCGTCATGGAACAGAGTATCCGCGGAACCTTCAGCCTGGTGGTACACGGTATCCAGGAGGAGGATGCAGGGCGTTACACGTGTGAGGCTGTCAACGATGCTGGGAGCCGCCAGGTCACAGTGGAGATCACTATAGAAGGGAACACAGGGAAGAAATCCAGACTCCCCTCCTCCAGTAGAACAGGTGGGCGGTTTGGAGTGTCAACCATGGAGAGCATGCCCAGTATCTGGGGGGAGAGCCCCCCTAAGTTTGTGACAAGGCCCTCGCGCATCTTTGTCCGAATGGGACAGAGTGGCAAGTTCTCTGCCAAAATCACAGGACGCCCACAGCCCCTGGTTACCTGGCTTAAGGGAGATGAAGAGCTTCATACTTCTTCCCACTTCAACGTGTTTGAGAAGTCGGGAATCCACTTCCTGGAGATCCGAGATGTGTGTGTGGACGATGCAGGAATGTACACCTGCTCTGTGGCCAACTGTGCTGGGAAGGCCACAGCTACAGCAGAGCTGAATGTTCAGGGTTCAGGCAGTGAGGCTGGCATCCTTGGTCCCTCTGCTCCGGTGGCCCCTGTCCCAAAGACAACTGACTCACCCGAAGTCAAGCACACAAGTAACGGCCTGCTCGCTGACCGGCGTTCACCTAccaagacaggagacaggactgagaccagagagagactcgCCACACTCACCAGGGAGACCAAAGACCACACAGAGCTGACCAAAGCAACATGGAAGGACACCATGGTGTCTCCCAAGACCACCATCCTGGCGTCTCCCAAGCCCCATGCAGACCTGCCTGATGAGGCCCCTAGAAAGCCTGGAGTGGCAACCCCAAAGGCTGCCAGCTCCACCAGTCTGCAACACCATCTAAGAGGCCAGGGAGCTGCTAGGACTAGCCCAGACCCACACACAGCCCCTGAGAGGGATACAAGGGATAGGGTGAAGACCCCCCCAGTGGGAGTCCAGAGCCCCCCACAGCCATCTCCAGAGCCCACTAGAGAGACTAGAAGGCAGGCCAGAGAGAGCAGGTCAGCGAGGACAGCAGTGACTGCTGGAGCTCCACCAAAATTTGACTCTGTACCTCAGAGCCAGGACACTAAAGAGGGGACCAAAGTCGCATTCAAATGCCAAGTCTCAGGCTCTCCCGTGGCTGGCCTGAGCTGGGTTAAAGATGGCTTCCCTTTGAGGCCCAGAGCAGGGCTGAGCTTCCAGCAGGATGGCAACACTCACATCCTCACTGTGGACAACGTCCAGAAAAGGGACAGTGGGACGTACGGATGCACCCTGACTACTAGCACTGGGAAGGTGTCCTCGACTTGGAACCTCACGGTCAAGAACCCACAGCTGGAGGGCAAGCCCCCTGCGTTCAGCACTGTCCTGAAGGGATGTTCAGTGAGTGAGGGCCAGGACTTCCTTCTGCAGTGTTCAGTGGAGGGGGATCCTCTACCTAACATCTCCTGGCTCCTAAACGACAAGCCAGTGCCGCATGCCCACTCTGCCTTTGAGAATGGCCTGACCCAACTCACAGTCCAGGGTGCACTGCCAGAGGACGAAGGCCAGTACGCATGTGTCGCTGAGAACAGCCATGGGAGAGCGGTGTGCACTTCCAGAGTCATCGTCAAAGGTGGGCTTGGGAGCCTCTACAGTGACCCGAAGAACATTTTCAAGAGGACGGACCCTCCAAATGCAGTTGACACCAAGAAGCCGTCTGCCCCTGTATTCCTACGAGGTCTGAAGGATCTGAAAGTCATGGACGGTAGCAAAGTCATCATGACCGTAGAGGTGACGGGGAATCCTCATCCAGAGATTGTGTGGCTCCACAATGGGAAGGAGATCCAGAAGTCAGAGGACTTCCACTTTGAGCGGAAGGGGAACCAATGCAGTCTGTTCATCCAGGAAGTCTTCCCTGAGGACACTGGGAAGTACACCTGTGAGGTGTGGAACGAAGTGGGAGAGGTTCGCACCCAGGCCTCGCTCACTGTACAAGAGCCCCAGGACGGGGTGCAGCCCTGGTTCATCACTAAGCCCAAGTCCACCACTGCCTCCTTGGGCCAGAATGTCCTGCTGTCCTGTGCCATCGCTGGGGACCCCTTCCCCCAGTGGAGCTGGATGAAGCAGGGCCAGGTGGTGACCACTGGGCTGGACTATGAGATTCTGCAGAAAGAGGATGTGGTGTCCCTGCTCATCAGGCGAGTCCGGCCCCACCACGCCGGGGACTACGAGATCAGCCTGAGGAACAAAGTGGGTGACTGCAGTTGTGTTGCCACTCTGTTGGTCAGTGAGGGTGCTGTGGTGTCCAGTGGAGAGCACCAAATGCTTGAGCCTTGTCAGCGTGTGGGAGGAGTGGACGGGACAGTGCGAGGCAGAGGAGCACCGAGCAGCAGCACTAGCGCTAGCAGCAGCTCCATTCAGCAGCAGCAGGAGTCGGAGGAGCCCAGCGCAGCCCGAGGACTCCTGAAGAGGCGCGTGGAGACCAAGGAGCACCCCGAGGACCAGATCCGCCTGCAGGAGGCTGAGCAGCGCGACTTCCGCACGGTGCTGGGCAGGAAAGTCACCACCAAGAGCGTCTCCGAGGAGGACCTGAAGGAGATCACGGCGGAACAGATGGACTTCAGGAGCCAGCTCCAGCCCAGAGGGGTCAAGCCGAAGACCCTGTCTGAAGATGAGAGGAAGGTCAACGCTCCCGCACAGGTGGACTTCAGAGCCGTCCTGGGGAAGAAGGGGGGAGCCCCTAAACAAGGCGCCGCTCCTGCCGAAAAAGGAGAGCCTGCAGATTTTAGATCGGTTCTGGCCAACAAGAAGAAGCAGACGAGCTTGGAGAACAACGGGGAGAGCCCTGCTCCAGCAGCAGCTCTGGTACCAGCAGCAGCAACACCCAAAGCTCCTGCTTCTTCCCCTGacaagaaagagaaggagaagaacgCTGTCAACTGTGTGGATGGTGGGATTATTGATAAGAAGAATAACAACATTGGAAAGGAGCCAGCGTTCAGTCAGAAGCTGAGTGATGTGAGCGTGGTGGACGGGGCTCGACTGCGACTACAGTGCCAGGTGATCTGTGACCCCCCTGCTACCACTACCTGGACACTAGACGGGAAGGTCATCAAGCCGTCCAAGTTTATCAAGCTGTCCAACGAAGGAGGCCAGTGCTCCCTGACCATCGACAAGGCCCTGCCCGAGGATGAGGGCCAGTACAAGTGCCGGGCAGAGAATTCTGCCGGTAAAGCTGAGTGTTCCTGCATGGTGCTGGTGGATGATCCTACAGACACAAACTCGACTGCAGCAGACAAGAAGATCAAGAAGCCATCCACCCCTACCTCAGAGAGTGAGGCGAGGATAAAGAAACCGAATACAAAGATGCCTCCCAAACAGGctatGCCCCCTCAGATTGTCCAGTTCCCAGACGACATGAAGATTCTGGCAGGGGAGAAGGTGGAAATTCTCTGTAAGTTTGGAGGAGCTCCACCAGTCAACTGCACCTGGCTCAAGTTCCGCAAACCAATTCAAGAGGTCAAAGGTGATTTAACCATTGAAACCACTGAGGTCACCAGTAAACTGACCATCGCAGACAGCCAGCAGGACCACTGTGGCTGCTACACCCTCGAACTGCGAAACAGCTACGGCTTGAGACAGGCAGCTCTCAACCTCACCATTGTGGACAAACCTGATCCCCCTGCACGAGTTCCAGCCGCCTCAGACATCCGCCGCTCCACACTCACACTGTCATGGTACGGCCCCACCTACGACGGGGGCAGTGCCGTCCAGTCCTACAACCTAGAGATATGGAACTCAGTGGACAAGGAGTGGAAGAACCTCATCTCCTGCAACAGCACCTCCTATAATGTCCAGAACCTGCTGGGTCAGCGCCAGTACAAGTTCAGGGTGCGGGCGGTCAATATTTACGGCATCGGGGAGCCCAGTGCCGAGTCTGAGGCTGTCACAATGTTAGAGGAGGATGTTGAGGAAAAGGAGGAGGTTGAGGATGATGAAGAGAAAGAGCCAGACTACAGAGATGTGATCGTTAGAACAGATGTGAAAGTCAAGGATCTGTATGATGTGGAAGAGAGGCTCGGAACGGGGAAATTCGGACAGGTATTCAAACTTTTGGAGAAGGGAACGAAAAAGCACTGGGCTGGAAAGTTCATCAAGGCCTACTCTGCAAAAGAGAAAGATAATGTGAGACAAGAGATTGCAATAATGAACTCCCTCCATCACCCCAAACTTGTCCAGTGCATTGATGCCTTCGAAGGCAAGTCAGACATCGTCATGGTTTTGGAAATgATCTCTGGTGGGGAGCTGTTTGAGCGTATCATCGATGAAGACTTTGAGCTGACAGAAAGGGAGGTCATTAAGTACATGCTGCAGATTGTGGACGGGGTTCACTACATCCACAAGCAGGGCATCGTCCATCTGGACCTGAAGCCTGAGAATATCATGTGTGTCAACAAGACCGGGAACACCATCAAACTCATTGACTTCGGCCTCGCTCGCAGACTAGAAAGCTCTGGAACATTGAAAGTTCTGTTTGGAACCCCTGAGTTTGTGGCCCCTGAAGTGATCAACTATGAAGCAATCAGTTACCCAACAGACATGTGGAGTATAGGGGTCATCTGCTACATCCTGGTGAGTGGCCTGTCCCCATTCATGGGGGATAACGACAACGAGACCCTTTCCAATGTGACCTCGGCCACTTGGGACTTTGAAGACGACGCCTTCGATGAGATCTCAGACCACGCCAAGGACTTCATTACAAACTTGCTGAAGAAAGATATGAAGGCTAGGCTGACATGCGATCAGTGCTATGAGCACCCGTGGCTAAAACAAGACACTGGCAAAATGGAGGCCAAGAAGCTGTCCAAGGAGAGGATGAAGAAGTACATCTTGAGAAGGAAATGGCAGAAAACCGGACATGCAGTGCGGGCCATCGGAAGGCTGTCATCAATGGCCATGTTGGCGGGCGTCAGTGCCAAGAAAGGCTCCCCTACTGAAGagGACAACCAGTTCCTTGAATGCCTAGAGTATGAGGAGAAAACCCAGGTCAAGCCCACCTTCAGCTCAGTCATCAaggatgtggaggtggtggaggggagcgCAGCCAGATTTGACTGCAAGATCGAGGGCTACCCTGATCCAGAGGTGGTGTGGTACAAAGACGAACAGCCAATCAAGGAGACCCGCCACTTCCAGATTGATTACGACGAGGAGGGCAACTGCAGCCTGGTGATCTCGGAAGTGAACGGCGACGACGATGCCAAATACACCGTCAAGGCTGTCAACAGCCTGGGCGAGGCCACGTGCACAGCCGAACTCCTGGTGGAGgtgatggaggaagaggaggaggaggaggaggaatgaacGGCACGACCGGTACAAGACTAACAGATGATATCCCCTGTGTTTTAGCCTTTAATCTCTTCaatgggtcgttccaccaattagGTGCTTTTTGAGTAGTGTAGCTTATTTCCTCGTTCACGGGGGAATGGAAGCACGTTGTGTGCAACAGGAAGGGGCGATGGAATGCAAGTCTCAAATCAATGTTTTtcttgttaaaacatttctagcccctctatctatgggtaacaagGTCGATGTGTTATTCTTGACCCTCCTCAGTTTTCCACCACGAAACACCAGAAAATGTCCTggaagagtagaaccagctcacctgcttttacactgtgatctgactattagatgttcaatgttcctTTTGAAAAACATATTTGATAAGGAATAGGATGCACAGAGGGACAAAATGCCGAATAACTTTGGCACTTTAttcaagtctttattcatattagCCCTTTACACTGGCCTATATGGATGGGGCTAAGTTGAAATGtgtcttacagaagaaatatgaaaagcatatGCATTACCATGTTAGCGAttttgaaagggaacagtttggagatgatGGCGAAATTAGTAGGCCAAAGATGACTCAACAGTTCATCTGACACAAGATTGAATCCAATCATTATACTGTTGCTTTTATGtgcatttttaaaaacattttaatgtgcttttttttgtcacatttgttgataacgaaatctgaaaatactatggctacattcagtaacatgataagaatatcCCTGGcaaatgtggggtaggtgcaacgcAAGACATCGAAATGACAAAGGGTTTGGAGTGaggggactaactggtgtcttcaAGTGGCCACAcgcacctctccaaagtgtgcactgTTCCTAAGAAATTGTAATGCACTTTTATGACAGAGTCTTCCAACTATAAGGTGGGGTGGTTGTTTTTTTTAGATCTCCTAGCTGTTCCTTTGAGGAACTGGAGCAACACacttgttttgtttggaacacaaccctgcatccaACACGACTAGCTTAAGTTATAACATATACGATATTACAGGGTTAGGCTTTCACAATGCAATTCGGGGAAGCCGATCCTCATTTTGGTGAGCATTGAAAGGAGTCATGAGTGCCTTCAGGCGTGTGCGCCACGGCGAATTTCTCACAATAAACAAACGAGGTCATTCTGCTCAGAACAACCAAGGGTGTGACTCCATGGCATGTACGTCAAACATAGTGATCAGAAACGTTGACACtggacatgagttttatgatatggaaacgTGAACTGCACATTTGGCCTCGTGGCTTGTATGACGTCAAGGCGGTTGCCCACTTAGCGGGAGGGATGGGGACAACTTTTTGTCGGGCGAGGTGCTCATGTTCGGAAAGGCTGTCAAGTCAAAAACCCACACAGAGTGTAAAGGGCTACGGATCAGATTGATTTCATTTTCCAGGTGGTCTATTTTAAAGGGCACTTCGTTTTAATAtgacaggcttttaaaatgcCGTATTTGTGTACAATTTCTACTttaaatatcaaagggatgcgaaaggcactcatttcgtggaacgacccTAAAAGCTGCGTTGCTCAGACACTCCCCTTCTCCGACACACTCAGAAATGGGCTTGAAAATGGGCTTGATGACCTTTTTGCTCTGTTTGTGCACTTTTCTTTTCTACTTACTTTTCAGTTATAGCAGGTTTCAGATGTTAATATTTATAACATTACCTTTGACATTATCCACATTCCAGCTGTTTGTGCTTTATCCATTTATTTAAAGGTATTTAATTTCCTTCAAGTTATCtccattttttttcttcctcaACCAAACAAGCCCAAAGTGACTGGTGTGTTTGTTATCAGCATTATTTGCAATTTACCCTGGGCTCTTTttaagaatgttttttttaattgtattttttatttaagcaCAGAGTCATGTTATCGTATTTGAGCATCAGTTTAGAGATCTTCCTGGCAAGCACGTGTCCACGATACTACAAATTTGCAATACTAAACAGACCGGTGAATTATCACATCTATATTTGTTTTGTATTAGATGTATGTAGATTTATATTTCTAAAATTTTTATAAATGTATCATTTTGACAAATTGCAGATTACATGTAATGTGAACACTACAAGTGTAGTTACTCACAGTTACTAAATAAATGTTTATCACAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300101 lncRNA upstream 4072 46337038 ~ 46337776 (+) True G263962
TU300091 lncRNA upstream 22648 46318948 ~ 46319200 (+) True G263952
TU300083 lncRNA upstream 33275 46308356 ~ 46308573 (+) True G263944
TU300078 lncRNA upstream 39394 46302235 ~ 46302454 (+) True G263939
TU300076 lncRNA upstream 40923 46300702 ~ 46300925 (+) True G263937
TU300220 lncRNA downstream 134927 46576728 ~ 46617406 (+) True G264067
TU300391 lncRNA downstream 423543 46865344 ~ 46865560 (+) True G264229
TU300392 lncRNA downstream 425036 46866837 ~ 46867059 (+) True G264230
TU300418 lncRNA downstream 468589 46910390 ~ 46910659 (+) True G264255
TU300423 lncRNA downstream 474617 46916418 ~ 46917336 (+) True G264259
XR_005046468.1 mRNA upstream 298003 46032765 ~ 46043845 (+) True LOC118957146
XM_021597003.2 mRNA upstream 331201 46008199 ~ 46010647 (+) True LOC110520034
XM_021597002.2 mRNA upstream 408826 45903665 ~ 45933022 (+) True LOC110520033
XM_036974278.1 mRNA upstream 457654 45852182 ~ 45884194 (+) True LOC110504149
XM_021596998.2 mRNA upstream 518547 45726239 ~ 45823301 (+) True asic4a
XM_036974297.1 mRNA downstream 16789 46458590 ~ 46542324 (+) False LOC110504152
XM_036974295.1 mRNA downstream 16789 46458590 ~ 46543088 (+) False LOC110504152
XM_036974296.1 mRNA downstream 16789 46458590 ~ 46544295 (+) False LOC110504152
XM_036974299.1 mRNA downstream 16789 46458590 ~ 46544295 (+) False LOC110504152
XM_036974300.1 mRNA downstream 16789 46458590 ~ 46544295 (+) False LOC110504152
TU299995 other upstream 157044 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 262423 46075484 ~ 46079425 (+) True G263733
TU299841 other upstream 407430 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 502368 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 1816440 44520419 ~ 44525408 (+) True G262037
TU300303 other downstream 389207 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 389207 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 389207 46831008 ~ 46832204 (+) True LOC110520046
TU303780 other downstream 3069002 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 3112697 49554498 ~ 49555838 (+) True G267381

Expression Profile