LOC110520033 (LOC106586153)


Basic Information

Item Value
gene id LOC110520033
gene name LOC106586153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45903665 ~ 45933022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597002.2
CTGTGTTCTCTAAATGACATTATAGGACCTCAGGGACTACAACGACGTCGCTGAAGTAGGCACATATTTAGCAGGAAACAACTTTGCTGTTATCATCATGTTGTCAAATGTGCTTCAAGACAGATGGCAATGTTGTCTGTCATTAGCTAGCACATTTCTCAGTGAAAATCCATGAATATAGGCCTAAAAATAATAATTGATGTAAGACTTATAAGTTcttagatcaactctccagtaggaggtgctgcccagcctattgttttttttcttctgatagtggatataatgTTCCAGATCGGACATTGTTTCAAATTTACCCTCAAAACAAcatgttgaaaattggttacccTGGTGACATAACCCTGTGGTTGAattttcaccctcaaaacaacattttaaatgCATGACGTTttgcaaatccaatgtattttccatgtcACAATACATTAACAAATTaagttgaaacaacgttgattcaaccagtgtatgCCCAGTGCCTACTGGGCACAGACATacattcaacatctattccacgttggttcaacatcaTTGTgttaaaatgatgtggaaacaacattgattcaaccagtgtgtgcccagtcgGTGGGTTGTCCTCCTCTGCCGCTATTAGTTACTCTGGGTGACGTAGAGGTGGGCTGGCAAAGTGCTAAGTGGTGTAGTTTAGAAATGCTATCAGTGTAATCAAATCATCACAAGTCAACGAGACTCCAGATAGCGCGCTGTTAGTACACCCACGACTTTCGGATGTATTCCAATGCAAATATCTTGGCGGAGCTGTCGTACAATTGTGCAGATGTGCGATAGCATGCAAGAGTGTTTAGTCGTCTCTCTTCCAACTTATTATCTTCATTCAATAAGTTGACAGATAGTGCAGTCAAACTAGTGTCGTTCTTTGAATGACTTGTCCTGCAGTCGTTAAGTACGTCCAGCACTTTGTCAGTCTTGTATCAGTTCTCAAATCAGATCCATACTTGAGCTCAAGACCTGTCATCCTCAAAGCGCGTCCCCCGGAACTCTGGAGTGGACAGATATTAGAGGGACATATAACTTGTTATACACCGCTCTATGTCATTTCTTATCTTTTGTCAAAAACAAGCGACACAATGGATTTCTCGCTCTGCCGCCTAATATGTCTTGTGATTGCAATCACTATGTTCAATCAAAGGGTAGATTCCAACAAGATTCTTGGGCTGAAGATCCCCAATATCGACCCCATTCTCAATGCTAACACCGTGTGCTTGACCCTGCCTGGACTGAACCACAGACAACTGGAGGTGTGCATGAGAAACCCCGACGTCACCGCCTCGGCCATCCAAGGCATCCAGATCGCCATCCATGAGTGCCAGCACCAGTTCAGAGGACACAGGTGGAACTGCTCCAGCCTGGAGACCAGGAACAAGATCCCATACGATAGTGTGGTTTTCAAACGAGGTTTCCGAGAGAGCGCCTTTGCATACGCCATCGCGGCAGCGGGCGTGGTCCACGCCGTGTCCAATGCCTGCTCCATGGGGAAGCTGAAGGCGTGCGGCTGCGACGAGAAGCGGAGAGGCGATGAGGAGGCTTTCCGCATCAAACTGAACCGGTTGCAGCTGGAGGCCATCCACCGGGGGAAGGGCATGGTGCACGGAGTCATGGAGCACTTCCCTGCAGACCTGCCCGGGCCTCAGGACTCCTGGGAGTGGGGAGGCTGCAGCCCGGACGTGGACTTTGGGGAGAAGTTCTCCAGGGACTTCCTGGACTCGCGCGAGACATACAAGGACATCCATGCCAGGATGAGGCTCCACAACAACAGAGTTGGCAGGCAGGTGGTGATGAACCACATGAGACGGAAATGCAAATGCCACGGGACATCAGGAAGCTGCCAGCTGAAGACCTGCTGGCAAGTCACACCGGAGTTCAGGGTGGTAGGCTCGCTGCTCAAGGAGCGTTTCCACATAGCCACCCTCATCAAAGCGCACAACAGGAACACGGGCCAGCTGGAGCACGCCCACCACCCCACACACAGACGGCTCAACGAGCTGGTCTACTTTGAGAAGTCCCCGGACTTCTGCGAGAGGGATCTGCGGTCCGACTCGGCCGGAACGCAAGGGAGGATCTGTAACAAGACGAGTCACGAAATGGACAACTGTGAAAGCCTCTGCTGCGGGCGAGGCCGTAACATTTTACAGCAGACCCGCAGTGAACGATGCAACTGCAAGTTCCACTGGTGCTGTTACGTGGTCTGCGAAGAGTGTCGAATAACAGAGTGGGTCAGTGTCTGCAAATGAAGAAATGGCGAAATGTAATAatctaccttttttttttaaaacagagaAAGACTGCAATACACCCCTTCCCTTTGCAATGGACTGCCATTTCCATTTAATAGAATGGATCGCACGAAAACAAGACTGGAATATAGCCAGTTCAAAGAGGTGCATTACCAATGTGTGCACAGCATGTGTCCAACCGCCACAGTTCCGAGACTCTAGATCTGCACTGCCTTTCATCTCGGAAAGTGTTTTTAGGATACATTAGATTAAAGATAGTGAGATACTATGGATGGTATTGATTACTGAGCACTCATTTATTTAAACAAGGCTTCCCGAAAATGACAAATGGCTGATTTTGTTATCTCTAGACTAAAACAACTGCATGGGATCCCGGTAAtttaagaagaagaagacaagcAGCAGTTGGGGAAAAGCTAGAGATTGTTCCAGAATGTTACATCTACTCTTGCTATACTCAGAGCGACAGGTTAACCATGTCAACTCATTTCgaatgtgttgtaatgtttcAGGTTACAAAATATGGCAATTCTAGATGTCACTCTGCAAAATGGCTACCTTGTCCCTCACAACAGTACATTTGTCCAtactggaaaaaaaaaaaaaaa

Function

NR:

description
protein Wnt-10a-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597002.2 True 2899 mRNA 0.47 4 45903665 45933022

Neighbor

gene id symbol gene type direction distance location
LOC110504149 wnt6 coding upstream 19471 45852182 ~ 45884194 (+)
asic4a LOC106586149 coding upstream 80364 45726237 ~ 45823301 (+)
LOC110520030 gmpaa coding upstream 323662 45571650 ~ 45580003 (+)
pnkd pnkd coding upstream 342283 45549912 ~ 45561382 (+)
dars1 sydc coding upstream 364367 45509465 ~ 45539298 (+)
LOC110520034 LOC106586154 coding downstream 75177 46008199 ~ 46010647 (+)
LOC118957146 NA coding downstream 99743 46032765 ~ 46043845 (+)
LOC110520040 LOC106586160 coding downstream 408826 46341848 ~ 46441801 (+)
LOC110504152 LOC106586162 coding downstream 525568 46458590 ~ 46544295 (+)
LOC110520045 LOC106586166 coding downstream 791033 46724055 ~ 46777392 (+)
G263690 NA non-coding upstream 2719 45900706 ~ 45900946 (+)
G263686 NA non-coding upstream 9419 45893940 ~ 45894246 (+)
G263680 NA non-coding upstream 14441 45888781 ~ 45889224 (+)
G263554 LOC106586150 non-coding upstream 58824 45844404 ~ 45844841 (+)
G263553 NA non-coding upstream 60598 45842854 ~ 45843067 (+)
G263711 NA non-coding downstream 1488 45934510 ~ 45934780 (+)
G263663 NA non-coding downstream 4215 45937237 ~ 45937786 (+)
G263720 NA non-coding downstream 12744 45945766 ~ 45945983 (+)
G263723 NA non-coding downstream 22365 45955387 ~ 45955847 (+)
G263724 NA non-coding downstream 30163 45963185 ~ 45963511 (+)
G263547 LOC106586150 other upstream 64185 45838921 ~ 45839480 (+)
G262037 NA other upstream 1378257 44520419 ~ 44525408 (+)
G261749 NA other upstream 1651114 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5451485 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 6235577 39658753 ~ 39668297 (+)
G263710 NA other downstream 1097 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 142462 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 251112 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 897986 46801058 ~ 46832288 (+)
G267358 NA other downstream 3577781 49510803 ~ 49512475 (+)

Expression


Co-expression Network