pnkd (pnkd)


Basic Information

Item Value
gene id pnkd
gene name pnkd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45549912 ~ 45561382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596994.2
TTGGGTCATACGTTGCACCGCCCACGCAATATGGCGCCTCCTGACTGGTCGGTAACCCTCATTGCAACTGCATCATTTTGCAGCGTGTTATGTTTATGTCTTCGTTTTAGGCGCACAGGACGTACCATTTGGAAAAGCTTTTTTGGTCAAATAATGGCACGCACTGAGAAACCCCTGTTTCGGATCGCGTATACATTGTACACAAGAACCAAACTTGGTTACATGTACTACAAGAGGCAGATGAGGAAGGCACGCGAGCAGTTCCCCACTGGACATTCCAGAGCACAGCCCATGGAATTAAATGGTATTAAAATCATGCCCATTTCAGTGCTGTCTGATAACTACAGCTACCTTGTCATTGACATGGCCTCGAGCGTTGCAGTGGTGGTAGACCCTGCAGACCCACAGACAGTTCAGGCAGTCCTCGAGGAAGAAGGGGTGATGTTAGAAGCGATCctctgcacacacaaacactgGGACCACAGTGGGGGTAACAAAGGACTTAAAAAGCTGTACAGCTCATGTCGTGTTTATGGAAATGCAACTGATAACATTCCTGGCCTCACACACCCACTGACAGACAAAGACTCCATAGACGTGGGCCGTATGCACTTCAAGGCACTGTTCACACCTGGTCACACAGTGGGTCATATGATCTACCTCCTGGATGGTCGTACCATAGGAGCCCCCTCCAGCCTGTTCTCAGGTGACCTGGTGTTCCTCTCCGGATGCGGGAGGATGTTTGAAGGCAGTGCCTTAACAATGCTGTCGTCACTAGACACGGTCGGCTCCTTGAGTGATGAAACCCTCTTATGGCCTGGCCATGAGTATGCAGAGGACAACCTGATGTTTGCTGCCGAGGTGGAGCCCCACAACGCAGCCAGGGAAAACAAGTACCAGTGGGTCCTACAACAGAGAGGTCAAAAGCTGTGTACGAGTCCCTCCACCATTGGAGAGGAAAAGGAGTACAACCCATTCCTGCGCATCCACTCCTCTGAGCTGCACCAGGCTTTGGGCCTCCAGCAGGACCAGGATGAGGACTGGACACTGTTCCGGGCTCGGGTCTTGGAGGAGCTGCGAAGGCGCAAGGATATTTACAAGGGCAGATAGCGATGAGAATACATTTGAACAAAATGCCTTGAGGTGAATTAAGCCAATTGGGAACTCTATATTGATGTAATGTGAGGTTCGAAATAAATACAGGcagatgtctttttttttttcttattcttTTTTTAAGAATGCCGTGTTCCGTTCCATTCCATGTTGGTTGTTCTGACCTTCCAGCTCTAATATTGCAGGTGACAAATATGAAACCCATtgcttgaaatatgcagacagaaaAGTTTAATTCAGGACACTAGTTGTAGTATCTCACTGTAAAGTTGATCTTGTGTGTGTGATTCTAAAAGTTGACATGGTCAACAAATGTATTACTGTAATGCAGCAGTCTTTTCAAACAATTGTACCATTTCTGGTACTCAAACTAGACACGGCGTCTAAAAGACTTGTTTGCACATTCATGTTATTTGTTGTCAGATTTCATTAATATTGAACAATAAAGATCAAGGGATAGGTACTGTTAGTTAGCTGCTATTATAGGTTTGTTTTCTATTTGACACGCGGTGATAATAGGAGTAAACAGATTGATATTGGAAAACCTGCATTATGTTTTTTACGGTTAAATGACAAACTTCCGGCAGGTACATGGGTGTTAACTCAGTTTTACTGGACCATATTGATACCACTTCAGTCAATGGGCACATGTTTCTATCTTGTATTTTGGCTGAATTGATACTGTATCTCCACATTGTATGCTGTGATAAAATGATTAAGAATTGTTGccattttatgattttttttcccAAATGGCTGTAGATTAAGTTATTGTTATGTGCAGAAATGAATTAAAGAAACCCTCTAGTTTATAGGTGACTGCTGACTTCTGAAAAGTTTAATTAAATTTTTTATAACCACTTTTCTTGAACGTGTTACTTAACGAGTTAGATATCCTTTATACTGCACTGAAGGAGACGATTACAAGTCATCAGTAAGTTTGATATTTGGTAGAAGATTGAGAGCGCTGGTTATTTGATGAAAATGAATTGGATTTTATTGCAATAaagattttcaaatcaaa

Function

symbol description
pnkd Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Predicted to act upstream of or within methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing).

NR:

description
probable hydrolase PNKD

GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
K23864 PNKD; paroxysmal nonkinesiogenic dyskinesia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596994.2 True 2140 mRNA 0.43 9 45549912 45561382

Neighbor

gene id symbol gene type direction distance location
dars1 sydc coding upstream 10614 45509465 ~ 45539298 (+)
LOC110520024 cxcr4 coding upstream 47773 45500138 ~ 45502139 (+)
LOC118956876 NA coding upstream 53932 45494309 ~ 45495980 (+)
glsb LOC106586143 coding upstream 150411 45340329 ~ 45399501 (+)
LOC110520018 LOC106586140 coding upstream 257278 45279937 ~ 45292634 (+)
LOC110520030 gmpaa coding downstream 10268 45571650 ~ 45580003 (+)
asic4a LOC106586149 coding downstream 164855 45726237 ~ 45823301 (+)
LOC110504149 wnt6 coding downstream 290800 45852182 ~ 45884194 (+)
LOC110520033 LOC106586153 coding downstream 342283 45903665 ~ 45933022 (+)
LOC110520034 LOC106586154 coding downstream 446817 46008199 ~ 46010647 (+)
G262852 NA non-coding upstream 61532 45400277 ~ 45488380 (+)
G262875 NA non-coding upstream 214546 45335127 ~ 45335366 (+)
G262827 NA non-coding upstream 295464 45254197 ~ 45254448 (+)
G262820 NA non-coding upstream 306821 45242850 ~ 45243091 (+)
G262814 NA non-coding upstream 322528 45227173 ~ 45227384 (+)
G263331 NA non-coding downstream 29871 45591253 ~ 45591539 (+)
G263362 NA non-coding downstream 55756 45617138 ~ 45617349 (+)
G263372 NA non-coding downstream 61616 45622998 ~ 45623306 (+)
G263376 NA non-coding downstream 62895 45624277 ~ 45624493 (+)
G263399 NA non-coding downstream 82811 45644193 ~ 45644394 (+)
G262037 NA other upstream 1024504 44520419 ~ 44525408 (+)
G261749 NA other upstream 1297361 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5097732 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 5881824 39658753 ~ 39668297 (+)
G254816 NA other upstream 6705356 38843510 ~ 38844556 (+)
G263547 LOC106586150 other downstream 277539 45838921 ~ 45839480 (+)
G263710 NA other downstream 372737 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 514102 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 622752 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 1269626 46801058 ~ 46832288 (+)

Expression


Co-expression Network