G263554 (LOC106586150)


Basic Information

Item Value
gene id G263554
gene name LOC106586150
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 45844404 ~ 45844841 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU299679
CGAAAAAGTTGCTTTGTTTGGCTTTGTTGGACTGGTTTATATGGCACTATTCTTGGCTCAAAATCTTCCTCGGCATCCACAGTCGATATCGAATTGGGTCTCCTCGCTCCTTTTGAATTCCCATCTTGGGCCAAACGTATTTCTTCACTCGCTTTCCCGTCGAGGACACAAGTTTCCTCTACCCAATTGACACTAAGCAAACTCAAGGTAAATCCCAAAGAAACACCGATAATAACCGGGCCGATCGGCCTCAGCAGAGAAATAAACATTGCAAATCTCATTTTCAACGTTGACTATAGACTACGTCGCCAGCCTACACACACCCTAATGTGCGACTCGTTGGGTAATTTTATGCATCAATCCGAATAGAGAACATTAGCAGCTGGTTGTATTTAAAAAGGACATTCTTCTCGACTAAAAAGATGTAGGCCTATGTAG

Function

NR:

description
chondroitin sulfate synthase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299679 True 438 lncRNA 0.43 1 45844404 45844841

Neighbor

gene id symbol gene type direction distance location
asic4a LOC106586149 coding upstream 21103 45726237 ~ 45823301 (+)
LOC110520030 gmpaa coding upstream 264401 45571650 ~ 45580003 (+)
pnkd pnkd coding upstream 283022 45549912 ~ 45561382 (+)
dars1 sydc coding upstream 305106 45509465 ~ 45539298 (+)
LOC110520024 cxcr4 coding upstream 342265 45500138 ~ 45502139 (+)
LOC110504149 wnt6 coding downstream 7341 45852182 ~ 45884194 (+)
LOC110520033 LOC106586153 coding downstream 58824 45903665 ~ 45933022 (+)
LOC110520034 LOC106586154 coding downstream 163358 46008199 ~ 46010647 (+)
LOC118957146 NA coding downstream 187924 46032765 ~ 46043845 (+)
LOC110520040 LOC106586160 coding downstream 497007 46341848 ~ 46441801 (+)
G263553 NA non-coding upstream 1337 45842854 ~ 45843067 (+)
G263552 NA non-coding upstream 1946 45842203 ~ 45842458 (+)
G263550 NA non-coding upstream 3641 45840534 ~ 45840763 (+)
G263548 NA non-coding upstream 8354 45834277 ~ 45836050 (+)
G263549 NA non-coding upstream 10523 45833635 ~ 45833881 (+)
G263680 NA non-coding downstream 43940 45888781 ~ 45889224 (+)
G263686 NA non-coding downstream 49099 45893940 ~ 45894246 (+)
G263690 NA non-coding downstream 55865 45900706 ~ 45900946 (+)
G263711 NA non-coding downstream 89669 45934510 ~ 45934780 (+)
G263663 NA non-coding downstream 92396 45937237 ~ 45937786 (+)
G263547 LOC106586150 other upstream 4924 45838921 ~ 45839480 (+)
G262037 NA other upstream 1318996 44520419 ~ 44525408 (+)
G261749 NA other upstream 1591853 44252069 ~ 44252551 (+)
LOC110519969 LOC106586020 other upstream 5392224 40440040 ~ 40452542 (+)
LOC110519960 LOC106586058 other upstream 6176316 39658753 ~ 39668297 (+)
G263710 NA other downstream 89278 45934119 ~ 45934418 (+)
G263733 LOC106586158 other downstream 230643 46075484 ~ 46079425 (+)
G263859 LOC107588258 other downstream 339293 46184134 ~ 46184804 (+)
LOC110520046 LOC106586167 other downstream 986167 46801058 ~ 46832288 (+)
G267358 NA other downstream 3665962 49510803 ~ 49512475 (+)

Expression


Co-expression Network