RNA id: TU300220



Basic Information


Item Value
RNA id TU300220
length 377
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G264067
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46576728 ~ 46617406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcagtggtcttgtatgtcttccatttcctaataattgcttccacagttgatttcttcaaaccaagctgcttacttattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcgaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccatactttgcaaataaatttattcaagatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU300101 lncRNA upstream 238952 46337038 ~ 46337776 (+) True G263962
TU300091 lncRNA upstream 257528 46318948 ~ 46319200 (+) True G263952
TU300083 lncRNA upstream 268155 46308356 ~ 46308573 (+) True G263944
TU300078 lncRNA upstream 274274 46302235 ~ 46302454 (+) True G263939
TU300076 lncRNA upstream 275803 46300702 ~ 46300925 (+) True G263937
TU300391 lncRNA downstream 247938 46865344 ~ 46865560 (+) True G264229
TU300392 lncRNA downstream 249431 46866837 ~ 46867059 (+) True G264230
TU300418 lncRNA downstream 292984 46910390 ~ 46910659 (+) True G264255
TU300423 lncRNA downstream 299012 46916418 ~ 46917336 (+) True G264259
TU301199 lncRNA downstream 342260 46959666 ~ 46960010 (+) True G264985
XM_036974296.1 mRNA upstream 32433 46458590 ~ 46544295 (+) False LOC110504152
XM_036974299.1 mRNA upstream 32433 46458590 ~ 46544295 (+) False LOC110504152
XM_036974300.1 mRNA upstream 32433 46458590 ~ 46544295 (+) False LOC110504152
XM_036974294.1 mRNA upstream 32433 46458591 ~ 46544295 (+) False LOC110504152
XM_036974298.1 mRNA upstream 32433 46458592 ~ 46544295 (+) False LOC110504152
XM_036974307.1 mRNA downstream 106649 46724055 ~ 46773948 (+) False LOC110520045
XM_036974308.1 mRNA downstream 106649 46724055 ~ 46777392 (+) True LOC110520045
XM_021597024.2 mRNA downstream 183652 46801058 ~ 46832288 (+) False LOC110520046
XM_036964882.1 mRNA downstream 403589 47020995 ~ 47027946 (+) True LOC110504153
XM_021597026.2 mRNA downstream 501322 47118728 ~ 47133302 (+) False LOC110520048
TU299995 other upstream 391924 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 497303 46075484 ~ 46079425 (+) True G263733
TU299841 other upstream 642310 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 737248 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 2051320 44520419 ~ 44525408 (+) True G262037
TU300303 other downstream 213602 46831008 ~ 46832134 (+) False LOC110520046
TU300304 other downstream 213602 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other downstream 213602 46831008 ~ 46832204 (+) True LOC110520046
TU303780 other downstream 2893397 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 2937092 49554498 ~ 49555838 (+) True G267381

Expression Profile