RNA id: XM_021597024.2


Basic Information

Item Value
RNA id XM_021597024.2
length 3914
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110520046
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 46801058 ~ 46832288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATAAGGAACGTGCAGTGCGCAGGAGCCGTGAAGGGGAAAATCGAGAGAAAGAACGAAACAGCTGCTGTTGGATTCTTAATACCTGCGTCCATAAGAACATCACAAGAAAAATCCCACCAGAAGAGGAAAAGGGGAAGCATGAAATACAGCTTGCAGGCATCATCGGTAAGGGGAACCACATAAGTATGAGCGGACAGTAAATTGTTCCCCGAATCCATAATTTTCCATCATATTCCACTGTCATAGGACTGAATGCAGATCCTATGTGCGCCCGCAGTAGCACAAAGCGGAGGTTTGGGAACCAAATTGTGTCCAACACCAACGCTGAAATCGGATGTACAGTACGTATTGTGCCGTTTCATATTGACCACGGTTTCTAATCACATTTACCAACGATTCATTAATTACCTACCGGATCCAGATTGCTTGATGGGGCGTCGAAACTTTTCAACGAAGCGTTTCAACTTTTAACCCAAGGTGTGGACTTCACGGAGGAGGAAAGTGTTGAACCAACCTGCATTGGTCTAACCTGGGAGGGCGATAAGTAATCAGCAGCGCCTCACCAAAGAATAATCTGTTCAAAAACCTGAACTGCAACGGACGCGTTTGGATAGCAGATGATCCTGTGCGTAATTGTTTTATAGCGGACTCCTTTTCGGGTGAAGAGCTCTTTGTTGTGATTGAAGTGACATTAGCCCTCTCTTATTTTCATGGCTTTGGAGTGCAGTAGTAGGAACAGTATGTGGAGCGAGGGGACAGTGCATGATTAGTTCGTTACAGAACGCACTTTCCTCGCCTTATTTCCAGTTCCAAGATATTGGACACAACACAAGGACAATTGCTGCAACTACAACGAAGTCCTGTACAGAAATAGACTTTACATTAAATCCTTCAGATTATTTCTCTCGCTGCTGCCATCGTAGTATGTCTGCACTCCGAAAGAAATTTGGGGACGATTATCAGGTAGTGACCACCTCATCCAGCGGGTCTGGATTCAACCAGCCGgcaccagagaagaagaagaagaggcaaCGCTTTGTGGACAAGAACGGGCGATGTAACGTCCAGCATGGAAACCTGGGTGGTGAAACCAGTAGATATCTTTCCGATTTATTCACCACACTGGTCGATTTGAAATGGCGCTGGAATTTATTCATCTTCATCCTTACATACACGGTGGCATGGCTCTTCATGGCCTTCATGTGGTGGATCATAGCCTACATAAGAGGAGACCTCCATCGAGCCCACGATGACAAGTATACGCCATGCGTTGCCAATGTCTACAACTTTCCCTCCGCGTTTTTATTCTTCATAGAAACGGAAGCCACAATAGGATATGGCTATAGGTATATCACGGACAAATGTCCCGAGGGGATCATTCTCTTTCTTTTCCAGTCAATCCTGGGATCAATTGTTGATGCTTTTTTGATTGGCTGCATGTTCATTAAGATGTCCCAGCCCAAAAAAAGGGCAGAGACTTTGATGTTCAGTGAACATGCAGCTATTTCGATGCGAGATGGAAAACTAACTCTCATGTTCAGAGTCGGCAACCTGCGTAATAGCCATATGGTCTCCGCACAGATccgctgcaaattgctgaaaTCTCGTCAGACGCCCGAAGGCGAGTTTCTTCCTCTGGATCAGTTGGAATTGGACGTGGGCTTCAGTACCGGGGCGGACCAGCTCTTCCTGGTCTCACCACTCACAATCTGCCATGTGATCGACACCAAAAGCCCATTCTACGAACTCTCCCAGAGATCCATGCAAACAGAGCAGTTTGAAATTGTGGTCATATTGGAAGGAATAGTGGAAACCACTGGGATGACTTGCCAAGCGAGGACCTCTTACACTGAGGACGAGGTTCTATGGGGACATCGTTTCTTCCCGGTCATCTCCCTGGAGGAGGGGTTCTTCAAGGTGGACTACTCTCAGTTTCACGCCACGTTTGAGGTCAACACTCCCCCGTACAGCGTGAAGGAGCAGGAGGAAAACCTGCTCATGTCCTCTCCACTCATGGCCCCGTCCCTGTGCAACAGCGGCGAGGGAGGGAAGAACAGCTCCATGGACTGCCTGGAGAACCTGGAGGACAAGGAGAGCACCACCACCAAGCTGCCATCCAAGCTGCAGAAGATGCAAGGGGGCGGCTGCGGACGGGACGGGCTGCCCATGCCTAGGAAGCTGCTGAGAATGAGCTCCACCACTTCAGAGATGATCTACCCCGGGAGCATGGGGGAGCTGCCAATGAAGCTGCAGCGCATCAGCTCCGTCCCAGGCGTCTCCGATGAGAAACAGATGAGCAAGATGGTCTCCAAGATCAGCTCCGATCCCATCAGCCAATCCGTGGCAGACTTGCCCCCCAAGCTGCTAAGGatgcaggggggagggggggtaggggGCCGAATGGACGGACACCTGCCCCCGAAACTCAGAAAGATGAATTCCGACCGCTTCACGTAGAATGGGCAACCCGTTTTAACTTATCACACCCCATACCCTTATTCCAACCCTTGTATTATTTCAAATTTATTAAAAGACATGATTCTTATACTCAAGAAAATGTAGTGTATATATTCGTACAGATATACCTTatataaaggggggggggggggggggggggggggtgatggaaTACAGAACATTTGTTCCTGGATGGAAGCATACGTGCTATGATGAAAGACCTCTGATTTCTTCAGGACAATGTACGATTAGCACAATCTGGCATGTCCAATACACTAACCGCATGCAAAACAGATTCTCTCTAATTTCTGGCATGACATTTATTGCTGTATTATTTTACAGAGATGATTTGAACAGTGACATTACTTACAATGGGTCCGAACATTTGCACAACGCCACGTGGTTTACAAAAATGGAGAACCTACATTACATGGGTCTAATTTACGGCGGAGAAGGCtgcatacatttgatttgagttggcCGCTTttgttgtttactgtaaaattgtGTGGCAACGCTCTGTTAAATGCATGCTACTATTATTATTGTCTTAGCTAGACAAAGGTAATAGACACAGATGTTTAGCCTTTACTATATTACCTTGTTTCCATTTCCACGTTTGTTCACGGCTGTATTTTTGGTATTTCATGTATAGGAGGATGTCTTACCATGTGAGATTTTTACACCTTCCTTAGTTCAGCAAGCGTACTGTATGTTGCTGGGCAATGCAATCTATATTTGCAAATGCATGGTCCACATCATATGACAGATTGGAACTGGGCACAATCTTATTAAGCAACGTGAGGTTACTTTTCAAGGTAACACTTATGTTGGAAGGGCCAATACTACCGCCTTATAAGCACAACATAACCATTACACAACACACAGTACACTATTTAGGGGTACTGTTCATGGCAGGAAGCATTTATGGCGTTTGGACAAATGTCCTGAGCAGTACTGTACAATGCCTCTTTGACATGGAAGTTAAAACAACTGAACACACGTGTTCGTGTATGCCTTCTCAAACAGTCGTTTTGAAGTTCAAATTATTATTTATTCGACTTTTCATTGAAAACGTGCACCAAAATTTCGAGTTAACTGTCACCGCATAGATATAGATTTAGAGGTGGACCTATATTTAGGAAAAAGTAACCACCTTTGTCTTAAGAGTCTATTATGCTCTCTCTTTAACTAAAGCAATAATGTTATTCTTAATGACTATAATCTTTATATACCCACAGGGTCTGCAGCAGCCCCATTACCAGTATATTTACAGAATCAATGCCATGGAACCTGGTCCTACTAAAACCACCAATGACGTTGTATGATACTCAAACTCTTCAGGAATAAAGATCTAAGAGGCAATTGTTGACACGTTGATTTAATGGGACACGGGTAGCTTGCTTTTTGCACTGTCactgtcaaataaataaaaaggctTGCATAGAAGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300220 lncRNA upstream 183652 46576728 ~ 46617406 (+) True G264067
TU300101 lncRNA upstream 463282 46337038 ~ 46337776 (+) True G263962
TU300091 lncRNA upstream 481858 46318948 ~ 46319200 (+) True G263952
TU300083 lncRNA upstream 492485 46308356 ~ 46308573 (+) True G263944
TU300078 lncRNA upstream 498604 46302235 ~ 46302454 (+) True G263939
TU300391 lncRNA downstream 33056 46865344 ~ 46865560 (+) True G264229
TU300392 lncRNA downstream 34549 46866837 ~ 46867059 (+) True G264230
TU300418 lncRNA downstream 78102 46910390 ~ 46910659 (+) True G264255
TU300423 lncRNA downstream 84130 46916418 ~ 46917336 (+) True G264259
TU301199 lncRNA downstream 127378 46959666 ~ 46960010 (+) True G264985
XM_036974308.1 mRNA upstream 23666 46724055 ~ 46777392 (+) True LOC110520045
XM_036974307.1 mRNA upstream 27110 46724055 ~ 46773948 (+) False LOC110520045
XM_036974300.1 mRNA upstream 256763 46458590 ~ 46544295 (+) False LOC110504152
XM_036964882.1 mRNA downstream 188707 47020995 ~ 47027946 (+) True LOC110504153
XM_021597026.2 mRNA downstream 286440 47118728 ~ 47133302 (+) False LOC110520048
XM_021597027.2 mRNA downstream 286442 47118730 ~ 47133302 (+) True LOC110520048
XM_021597036.2 mRNA downstream 413206 47245494 ~ 47255098 (+) False LOC110520055
XM_021597037.2 mRNA downstream 413206 47245494 ~ 47255098 (+) False LOC110520055
TU299995 other upstream 616254 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 721633 46075484 ~ 46079425 (+) True G263733
TU299841 other upstream 866640 45934119 ~ 45934418 (+) True G263710
TU299672 other upstream 961578 45838921 ~ 45839480 (+) True G263547
TU298041 other upstream 2275650 44520419 ~ 44525408 (+) True G262037
TU303780 other downstream 2678515 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 2722210 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 3004329 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 3330013 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 3770014 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile