Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU305367 |
| length | 1235 |
| RNA type | TUCP |
| GC content | 0.46 |
| exon number | 4 |
| gene id | hoxd3a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 50162278 ~ 50184327 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU305379 | lncRNA | upstream | 21387 | 50139433 ~ 50140914 (+) | True | hoxd12a |
| TU305308 | lncRNA | upstream | 59245 | 50102779 ~ 50103056 (+) | True | G268714 |
| TU305183 | lncRNA | upstream | 77144 | 50084110 ~ 50085157 (+) | False | G268604 |
| TU305184 | lncRNA | upstream | 77144 | 50084110 ~ 50085157 (+) | False | G268604 |
| TU305185 | lncRNA | upstream | 77144 | 50084110 ~ 50085157 (+) | False | G268604 |
| TU305504 | lncRNA | downstream | 49445 | 50232471 ~ 50232690 (+) | True | G268877 |
| TU305583 | lncRNA | downstream | 109659 | 50292685 ~ 50292893 (+) | True | G268956 |
| TU305597 | lncRNA | downstream | 129486 | 50312512 ~ 50312731 (+) | True | G268970 |
| TU305565 | lncRNA | downstream | 138461 | 50321487 ~ 50322542 (+) | True | G268938 |
| TU305566 | lncRNA | downstream | 139743 | 50322769 ~ 50323146 (+) | True | G268939 |
| XM_021597214.2 | mRNA | upstream | 3453 | 50155835 ~ 50158848 (+) | True | hoxd9a |
| XM_021597213.2 | mRNA | upstream | 9074 | 50146811 ~ 50153227 (+) | True | hoxd10a |
| XM_021597212.2 | mRNA | upstream | 15809 | 50144655 ~ 50146492 (+) | True | hoxd11a |
| XM_021597211.2 | mRNA | upstream | 21297 | 50139213 ~ 50141004 (+) | False | hoxd12a |
| XM_021584389.2 | mRNA | upstream | 25704 | 50134695 ~ 50136597 (+) | True | hoxd13a |
| XM_021584398.2 | mRNA | downstream | 4139 | 50187165 ~ 50188694 (+) | True | LOC110505268 |
| XM_021597221.2 | mRNA | downstream | 133044 | 50316070 ~ 50320201 (+) | False | LOC110520134 |
| XM_021597222.2 | mRNA | downstream | 133044 | 50316070 ~ 50321294 (+) | True | LOC110520134 |
| XR_002472946.2 | mRNA | downstream | 151274 | 50334300 ~ 50335908 (+) | False | LOC110520136 |
| XM_036974478.1 | mRNA | downstream | 155141 | 50338167 ~ 50367192 (+) | False | agps |
| TU303972 | other | upstream | 306799 | 49836617 ~ 49855502 (+) | True | G267529 |
| TU303803 | other | upstream | 606463 | 49554498 ~ 49555838 (+) | True | G267381 |
| TU303780 | other | upstream | 649826 | 49510803 ~ 49512475 (+) | True | G267358 |
| TU300304 | other | upstream | 3330057 | 46831008 ~ 46832244 (+) | False | LOC110520046 |
| TU300305 | other | upstream | 3330097 | 46831008 ~ 46832204 (+) | True | LOC110520046 |
| TU305730 | other | downstream | 419276 | 50602302 ~ 50604816 (+) | True | LOC110520146 |
| TU305958 | other | downstream | 715563 | 50898589 ~ 50900277 (+) | True | G269291 |
| TU307177 | other | downstream | 1390954 | 51573980 ~ 51578683 (+) | False | LOC110520169 |
| TU308945 | other | downstream | 2983926 | 53166952 ~ 53172428 (+) | True | acvr2aa |
| TU309190 | other | downstream | 3038401 | 53221427 ~ 53223265 (+) | True | LOC110520187 |
