hoxd12a (hoxd12)


Basic Information

Item Value
gene id hoxd12a
gene name hoxd12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50139213 ~ 50141004 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597211.2
AAAAAGGGTTGTAAGAAGCGTTTGAGAGAGCTCCATGGAAATGTGTGAGCGCAATCTTCTGAATTCTGGCTATGTTGGTTCTTTGTTGAATTTTCCTACCCCGGAGTCGTTATATTTTTCCAACCTGCGGGGCAATGGAGCTCATCTCTCTGGGCTGCATCAGATTTCCTACAACAGGCGAGAGGTGTGCTCGCTCCCGTGGACTTCCCCAAGTTCGTGCACATCTCCGCCTCAGAGCCGCGCCTTCAGTGGCTACTCTCCGCCGTTTCTATCAAATTCAGTCCCTGTAAATACTAATCCCAACAACCACAACAAGGGACCACTTGACGAGTCCAATAAATACTACTTTCAGGATGTAAACCACAAGCCAGAAGAACCTGCTAGACATGCGCAGGCCTTTTCTGGTGAACATGGAGTTATCAATTTCGGTAGCTCAAAATATGAATTTTCGAACTTGGATAGACGGTCACATAATTCCGGGGCACAACACGAACTGAATCCCACCAACCAGGCAAGTGCCGCCGGCTTCAAGCAGTCGGCCCATTCAATTCCCACAATTCAACCATCTTCAAGTAATGCAGGTGCCAGGGCGTCATTTTCTCATGATGCACCCTGGTGCTCTTCACAAGTGAAACCCAGAAAGAAGAGAAAACCATACACAAAGCCACAGCTTGCTGAACTTGAGAACGAATATATGATGAACGAGTTCATAAACAGGCAAAAAAGGAAGGAACTCTCTGAAAGACTGGACTTGAGTgatcaacaagtcaaaatatggtTTCAGAACCGCAGAATGAAAAAGAAGAGGCTGATGATGCGTGACCATGCATTTTCCATGTACTGAGAGCCTTGGGTCTTGATAATGACCTCGTGTGGCTTCGGTTCAGACAAGCGCAGCCACTTCAATCCTCTGTCCTGAGCCACTGATCTTGGCAATATAGTTATAGGcctatcatttatttttattttaagaaCGATTTATTGTATATTTTGGATGGTTATACAAACAACTGAGCTTGTGAATTGTTGTTACTATTGGCCTTGTATTATTAGGTAGTTGGTGATGAAGAAAGCATTATTTATTTTCTGAAAGTCACGTATTGAACTTgtgtttgagtgtttgtaaaGCATGCGATTTAGGTCAATAGGATACTTCTTGGCCTAATGATTTTATTCAACGACTCACACACTATATCTGAGCGTATAATAAGGTATGGCAATGTCAATGGATGATTGTTTTTAATATAGGCAGGCTATGCAAgcgttcattttttaaatttgtttcTGGGCTATGAATGTTATTTATAATTGAATCTTAATACATGTATAAGTTATGTAGGCTTATTGTATTGACGAAATACACCATGATTATACGGTTAGAAATGTATATTGCTCATATCTGTGATCAGTCCTTCTACGAGGCCTTCACAATTGCTCGTCCAAGCTCAAGTTCGTGTTTTTTGTCGGTGGAAAAATGAACCGTGAAATGTGTtttggattattattattttttaaatgtgtttgcatgTCTATCTAATTCAACacaataaatgtgtttttgtctta
>TU305379
ACATCTCCGCCTCAGAGCCGCGCCTTCAGTGGCTACTCTCCGCCGTTTCTATCAAATTCAGTCCCTGTAAATACTAATCCCAACAACCACAACAAGGGACCACTTGACGAGTCCAATAAATACTACTTTCAGGATGTAAACCACAAGCCAGAAGAACCTGCTAGACATGCGCAGGCCTTTTCTGGTGAACATGGAGTTATCAATTTCGGTAGCTCAAAATATGAATTTTCGAACTTGGATAGACGGTCACATAATTCCGGGGCACAACACGAACTGAATCCCACCAACCAGGCAAGTGCCGCCGGCTTCAAGCAGTCGGCCCATTCAATTCCCACAATTCAACCATCTTCAAGTAATGCAGGTGCCAGGGCGTCATTTTCTCATGATGCACCCTGGTGCTCTTCACAAGTGAAACCCAGAAAGAAGAGAAAACCATACACAAAGCCACAGCTTGCTGAACTTGAGAACGAATATATGATGAACGAGTTCATAAACAGGCAAAAAAGGAAGGAACTCTCTGAAAGACTGGACTTGAGTgatcaacaagtcaaaatatggtTTCAGAACCGCAGAATGAAAAAGAAGAGGCTGATGATGCGTGACCATGCATTTTCCATGTACTGAGAGCCTTGGGTCTTGATAATGACCTCGTGTGGCTTCGGTTCAGACAAGCGCAGCCACTTCAATCCTCTGTCCTGAGCCACTGATCTTGGCAATATAGTTATAGGcctatcatttatttttattttaagaaCGATTTATTGTATATTTTGGATGGTTATACAAACAACTGAGCTTGTGAATTGTTGTTACTATTGGCCTTGTATTATTAGGTAGTTGGTGATGAAGAAAGCATTATTTATTTTCTGAAAGTCACGTATTGAACTTgtgtttgagtgtttgtaaaGCATGCGATTTAGGTCAATAGGATACTTCTTGGCCTAATGATTTTATTCAACGACTCACACACTATATCTGAGCGTATAATAAGGTATGGCAATGTCAATGGATGATTGTTTTTAATATAGGCAGGCTATGCAAgcgttcattttttaaatttgtttcTGGGCTATGAATGTTATTTATAATTGAATCTTAATACATGTATAAGTTATGTAGGCTTATTGTATTGACGAAATACACCATGATTATACGGTTAGAAATGTATATTGCTCATATCTGTGATCAGTCCTTCTACGAGGCCTTCACAATTGCTCGTCCAAGCTCAAGTTCGTGTTTTTTGTCGGTGGAAAAAT

Function

symbol description
hoxd12 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic digit morphogenesis; pattern specification process; and skeletal system development. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in clubfoot.

NR:

description
homeobox protein Hox-D12a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597211.2 False 1566 mRNA 0.41 2 50139213 50141004
TU305379 True 1256 lncRNA 0.40 2 50139433 50140914

Neighbor

gene id symbol gene type direction distance location
hoxd13a hoxd13aa coding upstream 2616 50134695 ~ 50136597 (+)
LOC118944674 NA coding upstream 75379 50044718 ~ 50063834 (+)
LOC110504188 scrn3 coding upstream 264996 49871807 ~ 49874217 (+)
LOC110520117 LOC106586239 coding upstream 273215 49862239 ~ 49865998 (+)
LOC118959582 NA coding upstream 371857 49757817 ~ 49767356 (+)
hoxd11a hoxd11aa coding downstream 3651 50144655 ~ 50146492 (+)
hoxd10a hoxd10 coding downstream 5807 50146811 ~ 50153227 (+)
hoxd9a hoxd9aa coding downstream 14831 50155835 ~ 50158848 (+)
hoxd3a hoxd3 coding downstream 21274 50162278 ~ 50184327 (+)
hoxd4a hxd4a coding downstream 28597 50169601 ~ 50172397 (+)
G268714 NA non-coding upstream 36157 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 54056 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 95670 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 103190 50035823 ~ 50036023 (+)
G267615 NA non-coding upstream 153049 49985951 ~ 49986164 (+)
G268877 NA non-coding downstream 91467 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 151681 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 171508 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 180483 50321487 ~ 50322542 (+)
G268939 NA non-coding downstream 181765 50322769 ~ 50323146 (+)
G267529 NA other upstream 283711 49836617 ~ 49855502 (+)
G267381 NA other upstream 583375 49554498 ~ 49555838 (+)
G267358 NA other upstream 626738 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3306969 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3954409 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 461298 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 757585 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1432976 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3025948 53124656 ~ 53172428 (+)

Expression


Co-expression Network