Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118959582 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 49757817 ~ 49767356 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: zinc finger MYM-type protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005048018.1 | True | 905 | mRNA | 0.49 | 2 | 49757817 | 49767356 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cdca7a | LOC106586236 | coding | upstream | 22355 | 49731876 ~ 49735462 (+) |
| zak | LOC106586235 | coding | upstream | 25880 | 49676929 ~ 49731937 (+) |
| LOC110520113 | LOC106586233 | coding | upstream | 81040 | 49629246 ~ 49676777 (+) |
| pdk1 | pdk1 | coding | upstream | 193980 | 49560085 ~ 49563837 (+) |
| itga6a | LOC106586229 | coding | upstream | 200280 | 49529978 ~ 49557537 (+) |
| LOC110520117 | LOC106586239 | coding | downstream | 94883 | 49862239 ~ 49865998 (+) |
| LOC110504188 | scrn3 | coding | downstream | 104451 | 49871807 ~ 49874217 (+) |
| LOC118944674 | NA | coding | downstream | 277362 | 50044718 ~ 50063834 (+) |
| hoxd13a | hoxd13aa | coding | downstream | 367339 | 50134695 ~ 50136597 (+) |
| hoxd12a | hoxd12 | coding | downstream | 371857 | 50139213 ~ 50141004 (+) |
| G267471 | NA | non-coding | upstream | 10115 | 49744473 ~ 49747702 (+) |
| G267427 | NA | non-coding | upstream | 142972 | 49614584 ~ 49614845 (+) |
| G267416 | NA | non-coding | upstream | 146398 | 49611075 ~ 49611419 (+) |
| G267385 | NA | non-coding | upstream | 192625 | 49563888 ~ 49565192 (+) |
| G267503 | NA | non-coding | downstream | 24399 | 49791755 ~ 49794631 (+) |
| G267546 | NA | non-coding | downstream | 94020 | 49861376 ~ 49861654 (+) |
| G267547 | NA | non-coding | downstream | 99859 | 49867215 ~ 49867792 (+) |
| G267579 | NA | non-coding | downstream | 139106 | 49906462 ~ 49951847 (+) |
| G267580 | LOC106586243 | non-coding | downstream | 141538 | 49908894 ~ 49909998 (+) |
| G267381 | NA | other | upstream | 201979 | 49554498 ~ 49555838 (+) |
| G267358 | NA | other | upstream | 245342 | 49510803 ~ 49512475 (+) |
| LOC110520046 | LOC106586167 | other | upstream | 2925573 | 46801058 ~ 46832288 (+) |
| G263859 | LOC107588258 | other | upstream | 3573013 | 46184134 ~ 46184804 (+) |
| G263733 | LOC106586158 | other | upstream | 3678392 | 46075484 ~ 46079425 (+) |
| G267529 | NA | other | downstream | 69261 | 49836617 ~ 49855502 (+) |
| hoxd3a | hoxd3 | other | downstream | 394945 | 50162278 ~ 50184327 (+) |
| LOC110520146 | ino80d | other | downstream | 834946 | 50601983 ~ 50618761 (+) |
| G269291 | rap2a | other | downstream | 1131233 | 50898589 ~ 50900277 (+) |
| LOC110520169 | il1rl1 | other | downstream | 1806624 | 51573980 ~ 51582567 (+) |
