hoxd13a (hoxd13aa)


Basic Information

Item Value
gene id hoxd13a
gene name hoxd13aa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50134695 ~ 50136597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584389.2
AgtcaggcaacaaaaaaaaaaccgaAAGGGTTATTTGTTTTCATCCTTGCTTTGCATTCATGCACTGCAAAGCAATACGTTCTGGATCTGAGGGGACTATGTGAGGTTTTCACCGAGAAAAGTTGCATTGGCAGTTCGTCAAACTGAAATGGAGGGCTTGGGAGATAATATCACTTCTGTCCATCGCAGAAGTTTTTATTCCACTGCTCCCAGGACTAACCCAAGCCGGTCTGTACCAGGAGTAACGGTATACACAATTTCGGACAAACCAAACTCTTTTGGCTTAGAATCTCTTAAACCATATTCACCTCTTTCTACAGTAGCCACAAATGCGTCACTCACATTTGGCAGTCATTTGGGGAGCAGTTGTTATGGTGGCACAATTCCTGACAGCAATCTATTCCAACAGGGTGTGATGAAACCTACTTCTCAGGCGTCTCTATCTGGACACTCATCAGATAAACCAATGCATTTCTCAGGGGTTTCAAGTTCCAACATACACTGCAGTGAAATGCAGTCCAGACTGAAAGACTTTGGAAATGTTTACCAAGGTCTTTACCCAAGAATCACTGGATACATTGATGTACCTGTTGTAACAAGGGCTGGTCCTGGAGATCCGAGGCATGAGGCCTATCAGCAATTGAACTGGGCTAATAGTTGGAGCAATCCACTGTATTATGCCAGAGAACAGAAGCAGGGCTCGCAATTCTGGAAGTCATTCCTCACAGAGGAAGCAGTAATGAACCAGCCAGATGTCTGCACTTCATACCGACGTGGGAGGAAGAAACGGGTGCCCTACACGAAACTACAGCTCAAGGAACTTGAACGAGAGTACACCATTTGCAAGTTTATTACCAAGGAGAAAAGACAACGGATAGCTTCTTCCACCAACTTGTCTGAGAGACAAGTAACAATATGGTTTCAAAATCGTCGTGTCAAAAACAAGAAGCTTATGTCAAAAGATAGAGACCTTGAAACTTTCTCTTGATTTTTAAATTTCACCATTTATGAAATGCTGAATTGTCTCAGGTATTAGTCTCACAATATTTAGGTACATATTTATATtcatgtgttataatgtgtgcTGACTGATAGACTAAGCTGTTGTCAATTGTTTAGAGCAATATTAAATCATATGATGTTGAAATTGTTTTTCTACAATTCTGAAAAAAGATTTCTCCTGCTCTTTACTTAAActtttgttgttgaaattataGGGTTGGGTTATGTAGGTCAAATTCCAAGTATATTGTAAGAATATAAAATCTCCTAGATGTATTTTAAAGATTGGTCTACATTTGGGGTCCGTTTCCCCAGACAAaggttaagcctagtcctggacaacaaaaaaacattcttAATGTAGAATCTCTATTGACAGTGATTCTCAATGTAGATTCTCCATTGACAGTGCTAGTCCTGGACTAATAAGCAgtctcaatggagaatctccgtTATGGAAACATTTGTTTCAAGGTCAAAGCTTATTCGAAAAAGTTACGTGTTTTGTGTTGATAAGGTAAAATATGTTTGCCAAAGCAAATGGTGAATTAGGTATGATTGGGTCAATAAAATAGAATA

Function

NR:

description
homeobox protein Hox-D13-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584389.2 True 1581 mRNA 0.39 2 50134695 50136597

Neighbor

gene id symbol gene type direction distance location
LOC118944674 NA coding upstream 70861 50044718 ~ 50063834 (+)
LOC110504188 scrn3 coding upstream 260478 49871807 ~ 49874217 (+)
LOC110520117 LOC106586239 coding upstream 268697 49862239 ~ 49865998 (+)
LOC118959582 NA coding upstream 367339 49757817 ~ 49767356 (+)
cdca7a LOC106586236 coding upstream 399233 49731876 ~ 49735462 (+)
hoxd12a hoxd12 coding downstream 2616 50139213 ~ 50141004 (+)
hoxd11a hoxd11aa coding downstream 8058 50144655 ~ 50146492 (+)
hoxd10a hoxd10 coding downstream 10214 50146811 ~ 50153227 (+)
hoxd9a hoxd9aa coding downstream 19238 50155835 ~ 50158848 (+)
hoxd3a hoxd3 coding downstream 25681 50162278 ~ 50184327 (+)
G268714 NA non-coding upstream 31639 50102779 ~ 50103056 (+)
G268604 NA non-coding upstream 49538 50084110 ~ 50085157 (+)
G268620 NA non-coding upstream 91152 50043333 ~ 50043543 (+)
G268618 NA non-coding upstream 98672 50035823 ~ 50036023 (+)
G267615 NA non-coding upstream 148531 49985951 ~ 49986164 (+)
G268877 NA non-coding downstream 95874 50232471 ~ 50232690 (+)
G268956 NA non-coding downstream 156088 50292685 ~ 50292893 (+)
G268970 NA non-coding downstream 175915 50312512 ~ 50312731 (+)
G268938 NA non-coding downstream 184890 50321487 ~ 50322542 (+)
G267529 NA other upstream 279193 49836617 ~ 49855502 (+)
G267381 NA other upstream 578857 49554498 ~ 49555838 (+)
G267358 NA other upstream 622220 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 3302451 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3949891 46184134 ~ 46184804 (+)
LOC110520146 ino80d other downstream 465705 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 761992 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1437383 51573980 ~ 51582567 (+)
acvr2aa LOC106586327 other downstream 3030355 53124656 ~ 53172428 (+)

Expression


Co-expression Network