cdca7a (LOC106586236)


Basic Information

Item Value
gene id cdca7a
gene name LOC106586236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 49731876 ~ 49735462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597179.2
TGCCCTATCTGCAAGTCTGGAGGTGTTTCTCTGCATTCATTAAAGGACTGAACAAGCGTGAACACGAGTTTAGATTGACTTTCTTTGCAGGAAACTTTAAAGAAAACCAAATGAGTCCATCTCGCTCTAGGCAGGCCCCCCAGCCTCCTTCCACCAGGATGAGTTTGCGGAGCTTCCGTAACGTGCCCATGGagacatcctcttcctcctcagatgACAGCTGTGATAGTTTTGGCTCGGACGGTGGCTTTGCCAACACGAAAAGTAGCTTCAGAGAAGCTAAGAAGGTGGCGGAGAGAGCCAAGGTGTTTGAGGCTAGCTCGGAGGAAGAGTCTCTCACTGGGTTCGAGAATGCTTTCAGCAGTAAAATGAGTGCCATGACAGTGGACTCTGACTCGGAGGAGTCGGTGGGGCCTCGGCGGAAGGGCCGTCGGTCCCAGACCCTGAAGGTGGCCTTGAAGTTCCCCACCAGGAGGGCCACCCAGAAGACTACTGCAGCAGAGCCCTCTAAACAGCCCAAAAAAGAGTCTGACTCCAAGGAGGGAGGCAACTTCATGGACAAGAGAGCGCTTAACATTAAGGAGAACAAAGCAATGCTTGCAAAGCTGATGGCAGAACTCAACAAAATACCTGGCTTCCCCAGAAGATCATCCCTGCCTATGATGAATACGCCTCGTCGTGCCCCCCGCCAGTCTCTGGGAGCCTCAGGACCCCGTAGGAGGAACCCTGAACGCACCTCTCGGCCCCACACTCGCTCCCGCACCCTGGTGGACGGCCCCCCCAGCCCTCctccagaggaagaggaggacaagtTCAACCTGGTGCGCAGGAGCCGCTACTATGAGGAGGTGGATGAGGCGAAGGCGCCTCATCGGCGTAACTACAGCTTGGGGCTAGCTATTCCTCATGTGGTGCGGCCTGTGGAGGACATCTCCCAGATGGAGCTGGATCTGATCGCCAACAACGTGCGGGAGAAGGTGTACAACAGCTCCACTGGATCCACTTGCCACCAGTGCCGCCAGAAGACGATCGACACCAAGACCAACTGTCGTAACCCGGAGTGTGTGGGGGTGAGGGGTCAGTTCTGTGGCCCATGTCTCCGTAACCGCTACGGAGAGGAGGTCCGAGATGCCCTGCTGGATCCTGAGTGGGAGTGTCCGACATGCAGAGGGATCTGCAACTGCAGCTTCTGTAGAGCCAGAGAGGGTCGCTGTGCCACTGGAGTTCTGGTCTACCTGGCTAAATACCACGGCTATGACAACGCCCATGCCTACTTAAAAAGccTTAAAAAGGAAATGGACGAGAGCCAGTAAACCACGGAGGGCGTCACCTGATTCTGGACCTGACTGACAAGCGTTGTGTTAAATATCTCTATGTTCCATAATGCAAAACGGTTAATTCTTCTATTGTTCCTGATTCTGTATTTCTTTTCTTACATTGTTTTAAATGTATAAAGTTTTACCATCAATTACGTGACGTAATTTGATGAGTCTTCCTCACTGTTTATACTGTTATGATGAATATCTTCAATGTTTATAGTTGTTTGCTTGTGATCTCACTTTTAACCTGCAAGTTGTTATAAACCCAAATATATATCAAATGTGTAAGGACTAGTTGGGCTCTATGGTAATTGTACTCAAGATTCATACATTTTTCTGTAAGAAAATTAGCTTTTAACTTCAATAAGGCTTATCTGCTGTTTTAGTCTCAGCTGTTGGAAAGTAAAAAATGTTGTCACGGTTACTCTTGACTATTTGGTAGTCTGTCACTGTCCCACAATGCCCCTGGGGTGGAGAGGACACAGTGAgccattgacccccccccccccccccccccccactgtgatATCTGACAGTGCCTGGTTATATCCTTCATTAGATAACTGTCACTAATGGTGTGGAAACAATTAGCAGTGTCTAATGGGAATCTCATACCTGTAAATCAATTCTATTAAAGCActttctcgctc
>XM_021597181.2
TGCCCTATCTGCAAGTCTGGAGGTGTTTCTCTGCATTCATTAAAGGACTGAACAAGCGTGAACACGAGTTTAGATTGACTTTCTTTGCAGGAAACTTTAAAGAAAACCAAATGAGTCCATCTCGCTCTAGGGCCCCCCAGCCTCCTTCCACCAGGATGAGTTTGCGGAGCTTCCGTAACGTGCCCATGGagacatcctcttcctcctcagatgACAGCTGTGATAGTTTTGGCTCGGACGGTGGCTTTGCCAACACGAAAAGTAGCTTCAGAGAAGCTAAGAAGGTGGCGGAGAGAGCCAAGGTGTTTGAGGCTAGCTCGGAGGAAGAGTCTCTCACTGGGTTCGAGAATGCTTTCAGCAGTAAAATGAGTGCCATGACAGTGGACTCTGACTCGGAGGAGTCGGTGGGGCCTCGGCGGAAGGGCCGTCGGTCCCAGACCCTGAAGGTGGCCTTGAAGTTCCCCACCAGGAGGGCCACCCAGAAGACTACTGCAGCAGAGCCCTCTAAACAGCCCAAAAAAGAGTCTGACTCCAAGGAGGGAGGCAACTTCATGGACAAGAGAGCGCTTAACATTAAGGAGAACAAAGCAATGCTTGCAAAGCTGATGGCAGAACTCAACAAAATACCTGGCTTCCCCAGAAGATCATCCCTGCCTATGATGAATACGCCTCGTCGTGCCCCCCGCCAGTCTCTGGGAGCCTCAGGACCCCGTAGGAGGAACCCTGAACGCACCTCTCGGCCCCACACTCGCTCCCGCACCCTGGTGGACGGCCCCCCCAGCCCTCctccagaggaagaggaggacaagtTCAACCTGGTGCGCAGGAGCCGCTACTATGAGGAGGTGGATGAGGCGAAGGCGCCTCATCGGCGTAACTACAGCTTGGGGCTAGCTATTCCTCATGTGGTGCGGCCTGTGGAGGACATCTCCCAGATGGAGCTGGATCTGATCGCCAACAACGTGCGGGAGAAGGTGTACAACAGCTCCACTGGATCCACTTGCCACCAGTGCCGCCAGAAGACGATCGACACCAAGACCAACTGTCGTAACCCGGAGTGTGTGGGGGTGAGGGGTCAGTTCTGTGGCCCATGTCTCCGTAACCGCTACGGAGAGGAGGTCCGAGATGCCCTGCTGGATCCTGAGTGGGAGTGTCCGACATGCAGAGGGATCTGCAACTGCAGCTTCTGTAGAGCCAGAGAGGGTCGCTGTGCCACTGGAGTTCTGGTCTACCTGGCTAAATACCACGGCTATGACAACGCCCATGCCTACTTAAAAAGccTTAAAAAGGAAATGGACGAGAGCCAGTAAACCACGGAGGGCGTCACCTGATTCTGGACCTGACTGACAAGCGTTGTGTTAAATATCTCTATGTTCCATAATGCAAAACGGTTAATTCTTCTATTGTTCCTGATTCTGTATTTCTTTTCTTACATTGTTTTAAATGTATAAAGTTTTACCATCAATTACGTGACGTAATTTGATGAGTCTTCCTCACTGTTTATACTGTTATGATGAATATCTTCAATGTTTATAGTTGTTTGCTTGTGATCTCACTTTTAACCTGCAAGTTGTTATAAACCCAAATATATATCAAATGTGTAAGGACTAGTTGGGCTCTATGGTAATTGTACTCAAGATTCATACATTTTTCTGTAAGAAAATTAGCTTTTAACTTCAATAAGGCTTATCTGCTGTTTTAGTCTCAGCTGTTGGAAAGTAAAAAATGTTGTCACGGTTACTCTTGACTATTTGGTAGTCTGTCACTGTCCCACAATGCCCCTGGGGTGGAGAGGACACAGTGAgccattgacccccccccccccccccccccccactgtgatATCTGACAGTGCCTGGTTATATCCTTCATTAGATAACTGTCACTAATGGTGTGGAAACAATTAGCAGTGTCTAATGGGAATCTCATACCTGTAAATCAATTCTATTAAAGCActttctcgctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23408 CDCA7, JPO1; cell division cycle-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597179.2 False 1969 mRNA 0.50 10 49731876 49735462
XM_021597181.2 True 1966 mRNA 0.50 10 49731876 49735462

Neighbor

gene id symbol gene type direction distance location
LOC110520113 LOC106586233 coding upstream 55099 49629246 ~ 49676777 (+)
pdk1 pdk1 coding upstream 168039 49560085 ~ 49563837 (+)
itga6a LOC106586229 coding upstream 174339 49529978 ~ 49557537 (+)
dlx1a dlx1 coding upstream 261130 49464651 ~ 49470746 (+)
hat1 hat1 coding upstream 301794 49413492 ~ 49430082 (+)
LOC118959582 NA coding downstream 22355 49757817 ~ 49767356 (+)
LOC110520117 LOC106586239 coding downstream 126777 49862239 ~ 49865998 (+)
LOC110504188 scrn3 coding downstream 136345 49871807 ~ 49874217 (+)
LOC118944674 NA coding downstream 309256 50044718 ~ 50063834 (+)
hoxd13a hoxd13aa coding downstream 399233 50134695 ~ 50136597 (+)
G267427 NA non-coding upstream 117031 49614584 ~ 49614845 (+)
G267416 NA non-coding upstream 120457 49611075 ~ 49611419 (+)
G267385 NA non-coding upstream 166684 49563888 ~ 49565192 (+)
G267471 NA non-coding downstream 9011 49744473 ~ 49747702 (+)
G267503 NA non-coding downstream 56293 49791755 ~ 49794631 (+)
G267546 NA non-coding downstream 125914 49861376 ~ 49861654 (+)
G267547 NA non-coding downstream 131753 49867215 ~ 49867792 (+)
G267579 NA non-coding downstream 171000 49906462 ~ 49951847 (+)
G267381 NA other upstream 176038 49554498 ~ 49555838 (+)
G267358 NA other upstream 219401 49510803 ~ 49512475 (+)
LOC110520046 LOC106586167 other upstream 2899632 46801058 ~ 46832288 (+)
G263859 LOC107588258 other upstream 3547072 46184134 ~ 46184804 (+)
G263733 LOC106586158 other upstream 3652451 46075484 ~ 46079425 (+)
G267529 NA other downstream 101155 49836617 ~ 49855502 (+)
hoxd3a hoxd3 other downstream 426839 50162278 ~ 50184327 (+)
LOC110520146 ino80d other downstream 866840 50601983 ~ 50618761 (+)
G269291 rap2a other downstream 1163127 50898589 ~ 50900277 (+)
LOC110520169 il1rl1 other downstream 1838518 51573980 ~ 51582567 (+)

Expression


Co-expression Network